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IMGVR_UViG_3300028048_000213-3300028048-Ga0256405_1000229058

Arc-Vir

IMGVR_UViG_3300028048_000213-3300028048-Ga0256405_1000229058

Quality

72.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-159
PDB
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.69 44.0 5.16e-01 88.3% 93.6%
2dixA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 37.0 4.74e-01 72.3% 92.3%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.68 38.0 4.55e-01 73.7% 81.3%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.64 56.0 5.49e-01 94.9% 94.6%
2iqiB00 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.60 42.0 3.95e-01 73.0% 94.2%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.59 51.0 4.44e-01 92.7% 92.1%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.59 39.0 3.65e-01 70.1% 55.5%
4kwyA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 46.0 4.62e-01 87.6% 94.2%
2xzmE01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 41.0 4.45e-01 78.1% 90.5%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 34.0 3.34e-01 75.9% 55.6%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.53 38.0 3.30e-01 73.0% 82.1%
2joxA00 2.60.40.4240 Mainly Beta › Sandwich › Immunoglobulin-like › Transcription activator, Churchill 0.53 36.0 4.02e-01 97.8% 88.7%
3ga2A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.52 38.0 3.18e-01 75.2% 57.2%
4ec6A00 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 33.0 3.65e-01 76.6% 79.8%
3w1eA02 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.52 43.0 4.00e-01 90.5% 98.3%
4k00A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 36.0 3.60e-01 70.8% 89.8%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 38.0 2.97e-01 76.6% 84.0%
2w35A00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.51 37.0 3.15e-01 75.9% 57.8%
3bghB01 3.30.160.180 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Putative neuraminyllactose-binding hemagglutinin homolog like domain 0.51 42.0 3.96e-01 89.8% 93.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939185 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.78 64.0 6.85e-01 96.4% 100.0%
3922537 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.72 47.0 5.24e-01 90.5% 85.7%
3330582 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.71 61.0 6.40e-01 96.4% 100.0%
3789856 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.71 47.0 5.14e-01 84.7% 80.0%
3344044 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.70 46.0 5.48e-01 81.0% 100.0%
1871052 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.65 57.0 5.09e-01 93.4% 75.0%
3939992 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 45.0 4.93e-01 87.6% 89.1%
3177367 330.1.1.4 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Rad52_Rad22 0.64 53.0 5.13e-01 88.3% 91.6%
4643563 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.64 36.0 4.30e-01 75.9% 82.2%
4126991 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.62 35.0 4.16e-01 75.9% 82.2%
3164281 5069.1.1.92 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › CcmF_C 0.61 38.0 4.35e-01 89.8% 84.0%
3280381 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 41.0 4.03e-01 74.5% 84.6%
4456410 2484.1.1.43 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.53 39.0 3.23e-01 75.9% 57.1%
3963916 7503.1.1.6 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › GNA1162-like 0.53 46.0 4.17e-01 94.9% 98.9%
6401 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.52 35.0 3.62e-01 70.8% 71.4%
D2 high residues 209-272
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.80 68.0 6.97e-01 92.2% 96.8%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.69 47.0 4.07e-01 70.3% 96.9%
2r5uC00 1.10.860.10 Mainly Alpha › Orthogonal Bundle › DNAb Helicase; Chain A › DNAb Helicase; Chain A 0.65 59.0 4.56e-01 100.0% 52.9%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.65 46.0 3.84e-01 90.6% 40.7%
2xb4A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 50.0 3.47e-01 92.2% 38.6%
1ak2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.48e-01 92.2% 39.5%
5mq1A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 51.0 4.45e-01 100.0% 82.4%
2cvzA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.60 49.0 3.89e-01 90.6% 87.9%
3bh1A02 1.20.1570.10 Mainly Alpha › Up-down Bundle › dip2346 fold › dip2346 domain like 0.58 41.0 3.46e-01 89.1% 45.5%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 45.0 4.24e-01 93.8% 78.2%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 40.0 3.75e-01 81.2% 59.0%
4akgA06 1.10.8.710 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain 0.57 47.0 4.14e-01 98.4% 73.8%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.57 48.0 4.62e-01 100.0% 93.6%
1vpdA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.56 43.0 3.55e-01 89.1% 90.1%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.55 48.0 3.73e-01 100.0% 80.3%
5je8B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 45.0 3.63e-01 92.2% 85.9%
1vw4L02 1.10.246.170 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 42.0 3.90e-01 87.5% 75.3%
1om2A00 1.20.960.10 Mainly Alpha › Up-down Bundle › Mitochondrial Import Receptor Subunit Tom20; Chain A › Mitochondrial outer membrane translocase complex, subunit Tom20 domain 0.54 36.0 3.30e-01 89.1% 47.4%
2f33A01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.54 39.0 3.83e-01 81.2% 87.3%
6orkA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 38.0 2.57e-01 75.0% 20.0%
2w02B01 1.10.150.640 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › AcsD, thumb domain, helical bundle 0.53 40.0 3.90e-01 100.0% 71.6%
3w6zA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 42.0 3.55e-01 92.2% 90.9%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 43.0 3.78e-01 95.3% 68.9%
4oydB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 39.0 3.37e-01 85.9% 82.9%
3n05A02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 40.0 3.01e-01 89.1% 46.0%
1mhyG02 1.20.1280.30 Mainly Alpha › Up-down Bundle › Monooxygenase › Methane monooxygenase, gamma chain, domain 2 0.52 39.0 3.80e-01 84.4% 72.6%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.51 39.0 3.35e-01 82.8% 76.9%
6w0pA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.51 44.0 2.66e-01 96.9% 93.7%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943035 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.82 70.0 7.05e-01 92.2% 95.4%
4009408 639.2.1.1 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › YmgB 0.81 72.0 7.12e-01 98.4% 94.1%
4009124 639.2.1.5 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) › PF27475 0.81 68.0 7.07e-01 92.2% 100.0%
3920264 109.4.1.1242 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N 0.79 71.0 4.56e-01 98.4% 26.0%
5078823 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.79 71.0 4.33e-01 100.0% 20.6%
5026703 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.77 70.0 4.29e-01 100.0% 21.1%
3274317 109.4.1.1446 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RRP12_HEAT, HEAT_RRP12_N 0.77 68.0 3.73e-01 98.4% 7.5%
3727207 109.4.1.1242 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_RRP12_N 0.76 70.0 4.51e-01 100.0% 27.8%
3286911 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 5.85e-01 90.6% 91.4%
4679434 2004.1.1.192 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.71 57.0 4.07e-01 85.9% 78.9%
4958393 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.71 64.0 3.90e-01 100.0% 18.2%
4947959 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 57.0 4.02e-01 85.9% 77.1%
4943037 101.1.17.1 alpha arrays › HTH › HTH › FF domain › Ribosomal_S17e 0.68 56.0 5.35e-01 93.8% 82.7%
3436562 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 54.0 5.18e-01 95.3% 76.0%
4933934 3239.1.1.1 alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.66 46.0 2.89e-01 71.9% 21.5%
3517558 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.65 53.0 4.68e-01 93.8% 69.0%
3792916 639.2.1.0 alpha arrays › HHA-like › Regulator of acid resistance influenced by indole (AriR) › Regulator of acid resistance influenced by indole (AriR) 0.65 51.0 4.92e-01 89.1% 86.7%
3889516 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.65 56.0 4.71e-01 95.3% 72.4%
3848681 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.64 50.0 5.05e-01 89.1% 100.0%
3255275 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 49.0 5.02e-01 95.3% 88.3%
4994276 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.63 54.0 4.92e-01 100.0% 83.3%
3993206 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.62 49.0 4.81e-01 90.6% 94.3%
3180777 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.61 49.0 4.86e-01 92.2% 97.1%
5012498 3843.1.1.28 alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › MbhD 0.61 42.0 4.27e-01 73.4% 86.2%
4134592 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.61 52.0 4.56e-01 98.4% 94.0%
3966922 102.1.3.28 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PF27805 0.61 50.0 4.14e-01 100.0% 58.6%
3922168 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.61 50.0 4.90e-01 93.8% 92.9%
4314938 2498.1.1.22 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.60 48.0 3.77e-01 87.5% 54.0%
4395930 101.8.1.4 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.60 52.0 3.53e-01 98.4% 34.8%
4559316 101.1.2.352 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc5 0.59 50.0 4.90e-01 98.4% 88.6%
5057991 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 4.43e-01 85.9% 84.3%
3234731 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.58 46.0 4.63e-01 92.2% 92.3%
1701031 633.27.1.1 alpha bundles › Bromodomain-like › Four-helical bundle in acetyl-CoA carboxylase › Four-helical bundle in acetyl-CoA carboxylase › ACC_central 0.58 49.0 4.59e-01 100.0% 90.4%
3797632 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 45.0 4.53e-01 92.2% 98.5%
3468296 148.1.1.25 alpha arrays › Histone-like › Histone-related › Histone › Tim17 0.57 47.0 3.86e-01 96.9% 87.7%
3250201 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.56 44.0 4.43e-01 92.2% 100.0%
None 0.55 46.0 2.98e-01 93.8% 47.1%
4538427 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.55 44.0 4.47e-01 93.8% 96.9%
4019914 101.1.1.21 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc5 0.54 43.0 4.17e-01 92.2% 85.3%
5058633 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.51 40.0 3.92e-01 93.8% 77.1%
3514383 109.4.1.144 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ints3_N 0.51 40.0 2.48e-01 90.6% 12.8%
3339911 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.51 39.0 3.11e-01 81.2% 43.1%
5059280 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.51 36.0 3.74e-01 93.8% 81.7%