←Back to structures
IMGVR_UViG_3300028167_000246-3300028167-Ga0268285_10026691
Arc-VirIMGVR_UViG_3300028167_000246-3300028167-Ga0268285_10026691
Identity
- Kingdom:
- archaea
Quality
72.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-72
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3jyhA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.67 | 49.0 | 3.11e-01 | 77.0% | 49.2% |
| 1u8xX02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.65 | 38.0 | 2.50e-01 | 96.7% | 13.0% |
| 3e82E02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.64 | 43.0 | 2.96e-01 | 100.0% | 21.0% |
| 2gk4A00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.63 | 46.0 | 3.21e-01 | 100.0% | 21.8% |
| 6fgjA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.62 | 49.0 | 3.60e-01 | 83.6% | 44.7% |
| 4jndA02 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.62 | 53.0 | 3.50e-01 | 100.0% | 44.2% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 42.0 | 3.25e-01 | 90.2% | 29.5% |
| 2ivdB01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 34.0 | 2.57e-01 | 95.1% | 19.5% |
| 1u7zC00 | 3.40.50.10300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like | 0.60 | 45.0 | 3.14e-01 | 98.4% | 23.3% |
| 3wirA03 | 2.60.420.10 | Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 | 0.57 | 38.0 | 3.75e-01 | 100.0% | 62.3% |
| 4ljkG00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.56 | 41.0 | 2.82e-01 | 78.7% | 65.3% |
| 2a2cA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.54 | 48.0 | 3.28e-01 | 100.0% | 29.7% |
| 1fi2A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 47.0 | 3.30e-01 | 100.0% | 56.7% |
| 6r8gB02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.52 | 38.0 | 2.72e-01 | 93.4% | 27.6% |
| 2x0jA02 | 3.90.110.10 | Alpha Beta › Alpha-Beta Complex › L-2-Hydroxyisocaproate Dehydrogenase; Chain A, domain 2 › Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal | 0.52 | 37.0 | 2.75e-01 | 93.4% | 30.3% |
| 3il0A00 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.51 | 42.0 | 3.35e-01 | 93.4% | 50.8% |
| 2r41A00 | 3.10.450.150 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein | 0.50 | 41.0 | 3.61e-01 | 100.0% | 82.5% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3200163 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.69 | 39.0 | 2.63e-01 | 93.4% | 15.3% |
| 4030348 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.68 | 44.0 | 2.51e-01 | 98.4% | 6.5% |
| 4072871 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.66 | 50.0 | 3.49e-01 | 80.3% | 34.1% |
| 7488 | 279.1.1.2 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Glyco_hydro_4C | 0.65 | 38.0 | 2.51e-01 | 96.7% | 13.0% |
| 3226150 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.64 | 43.0 | 3.24e-01 | 90.2% | 28.7% |
| 3964521 | 2004.1.1.107 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DnaB_C | 0.62 | 51.0 | 3.35e-01 | 100.0% | 21.1% |
| 3965288 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.62 | 51.0 | 3.07e-01 | 100.0% | 13.3% |
| 3816125 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.61 | 45.0 | 3.32e-01 | 93.4% | 28.6% |
| 4585891 | 213.1.1.6 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › ODC_AZ | 0.60 | 51.0 | 3.52e-01 | 100.0% | 57.4% |
| 4034310 | 2008.1.1.107 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › NERD | 0.60 | 49.0 | 3.42e-01 | 90.2% | 95.6% |
| 4941424 | 2004.1.1.76 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 | 0.59 | 41.0 | 2.51e-01 | 72.1% | 70.9% |
| 3279835 | 279.1.1.2 ↗ | a+b complex topology › LDH C-terminal domain-like › LDH C-terminal domain-like › LDH C-terminal domain-like › Glyco_hydro_4C | 0.59 | 35.0 | 2.33e-01 | 85.2% | 13.6% |
| 1855692 | 864.1.1.1 ↗ | a+b two layers › DLC › DLC › DLC › Dynein_light | 0.57 | 50.0 | 4.33e-01 | 100.0% | 81.4% |
| 3957539 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 48.0 | 3.87e-01 | 100.0% | 54.4% |
| None | — | 0.55 | 48.0 | 3.28e-01 | 100.0% | 28.9% | |
| 3958247 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 47.0 | 3.24e-01 | 100.0% | 29.1% |
| 3958652 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 47.0 | 3.45e-01 | 100.0% | 36.8% |
| 3958443 | 2484.1.1.108 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1_assoc | 0.54 | 46.0 | 3.34e-01 | 100.0% | 34.9% |
| 2105827 | 864.1.1.0 ↗ | a+b two layers › DLC › DLC › DLC | 0.54 | 46.0 | 4.06e-01 | 100.0% | 83.2% |
| 5009448 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.53 | 39.0 | 3.13e-01 | 98.4% | 39.2% |
| 3396503 | 212.1.1.4 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N,GalKase_gal_bdg | 0.53 | 46.0 | 3.18e-01 | 100.0% | 29.5% |
| 11077 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.53 | 41.0 | 3.25e-01 | 88.5% | 45.3% |
| 3934658 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 40.0 | 3.98e-01 | 93.4% | 96.9% |
| 3484074 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.50 | 42.0 | 3.29e-01 | 95.1% | 100.0% |
| 3935315 | 209.1.1.0 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like | 0.50 | 41.0 | 3.38e-01 | 98.4% | 48.0% |