Back to structures

IMGVR_UViG_3300028168_000114-3300028168-Ga0268277_10066001

Arc-Vir

IMGVR_UViG_3300028168_000114-3300028168-Ga0268277_10066001

Quality

73.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 48-127
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vx7301 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.91 66.0 6.89e-01 88.7% 81.1%
4a17U01 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.90 68.0 6.99e-01 93.8% 81.8%
1vq8V00 1.10.287.310 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.84 62.0 6.89e-01 88.7% 95.4%
1q0gA00 1.20.120.400 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase 0.83 59.0 5.05e-01 72.5% 51.3%
4w8pA02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.80 54.0 4.57e-01 70.0% 52.3%
2rp4A00 6.10.280.60 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain 0.76 55.0 5.89e-01 96.2% 84.5%
2e9xA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 62.0 5.14e-01 88.7% 60.9%
8fbnB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.72 55.0 3.91e-01 100.0% 28.8%
2jdiG01 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.72 45.0 4.94e-01 70.0% 82.0%
2mmbA00 4.10.640.20 Few Secondary Structures › Irregular › 30s Ribosomal Protein S18 › 0.72 55.0 5.00e-01 92.5% 61.7%
3whjA00 6.10.140.1710 Special › Helix non-globular › Helix Hairpins › 0.70 66.0 5.80e-01 100.0% 75.7%
1uurA01 1.20.58.240 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › STAT; domain 1 0.69 63.0 5.58e-01 97.5% 87.3%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.68 58.0 4.24e-01 92.5% 75.7%
3l1nA02 1.20.1280.140 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.68 58.0 5.67e-01 92.5% 90.8%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.67 46.0 3.13e-01 97.5% 20.4%
1t98A02 1.20.58.590 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chromosome partition protein MukF, middle domain 0.67 59.0 4.71e-01 100.0% 71.8%
8sbeA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.67 53.0 4.05e-01 91.3% 35.7%
3e0sA00 1.40.20.10 Mainly Alpha › Alpha solenoid › CHAD domain › CHAD domain 0.67 63.0 4.12e-01 100.0% 61.8%
3rkgA02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.66 60.0 4.72e-01 100.0% 69.5%
8d7hD01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 58.0 4.52e-01 98.8% 72.8%
7csoA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.65 56.0 4.17e-01 100.0% 57.7%
2lm9A00 1.20.58.970 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.65 58.0 5.47e-01 97.5% 95.8%
3u4qA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 50.0 3.57e-01 96.2% 28.9%
3ezuA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 55.0 4.26e-01 96.2% 78.6%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.64 59.0 4.58e-01 98.8% 84.9%
3ce2A01 1.20.140.70 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Oligopeptidase f, N-terminal domain 0.64 55.0 4.52e-01 100.0% 57.1%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.63 57.0 5.31e-01 100.0% 88.8%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.63 56.0 5.11e-01 100.0% 85.0%
2ehwA00 6.10.140.1220 Special › Helix non-globular › Helix Hairpins › 0.63 58.0 5.03e-01 97.5% 82.6%
2cmrA00 1.20.58.1860 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.63 56.0 4.25e-01 100.0% 50.5%
1w99A01 1.20.190.10 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › Pesticidal crystal protein, N-terminal domain 0.63 58.0 4.43e-01 100.0% 49.1%
5j1hA01 1.20.58.1060 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.62 55.0 4.25e-01 100.0% 51.1%
3zdqA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.62 57.0 3.65e-01 98.8% 82.0%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 57.0 4.87e-01 100.0% 88.5%
1a36A04 1.10.132.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.62 49.0 3.85e-01 87.5% 53.7%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.61 52.0 4.54e-01 100.0% 62.8%
2i0mA02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.60 54.0 5.05e-01 100.0% 85.1%
2yfaB01 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.60 53.0 4.66e-01 100.0% 65.5%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.60 53.0 4.63e-01 98.8% 83.3%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 51.0 4.32e-01 100.0% 87.2%
6lw5A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.59 52.0 3.52e-01 100.0% 94.4%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.59 50.0 4.36e-01 100.0% 86.3%
6v9zA02 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.58 53.0 3.50e-01 100.0% 80.0%
1a5tA03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.57 49.0 4.26e-01 97.5% 62.1%
5wp3B00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.57 51.0 4.74e-01 100.0% 93.1%
1gcvB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 48.0 4.16e-01 100.0% 87.5%
2vwaA00 1.20.58.1330 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein 0.56 49.0 4.53e-01 95.0% 79.8%
2o57A01 1.10.287.840 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mycolic acid cyclopropane synthase domain like 0.55 47.0 4.35e-01 96.2% 86.7%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.55 47.0 4.10e-01 96.2% 76.6%
2bvlA01 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.53 47.0 4.64e-01 100.0% 97.7%
6xz3A01 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 46.0 4.09e-01 100.0% 70.1%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5054079 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.92 74.0 7.43e-01 83.7% 85.0%
3574609 3755.4.1.0 alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain 0.86 61.0 4.49e-01 73.8% 45.3%
3592587 3567.1.1.0 a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer 0.83 62.0 5.21e-01 77.5% 93.6%
3585987 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.82 65.0 6.72e-01 93.8% 88.0%
3619957 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.82 65.0 6.34e-01 93.8% 77.6%
3609189 192.29.1.19 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › Cornichon 0.81 66.0 4.96e-01 87.5% 58.2%
3531576 192.13.1.0 alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.80 62.0 6.67e-01 93.8% 92.9%
3856159 261.1.1.1 a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT 0.78 69.0 4.07e-01 100.0% 12.4%
4995211 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.78 66.0 4.85e-01 92.5% 36.5%
3936950 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.76 65.0 6.00e-01 97.5% 74.0%
3625019 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 70.0 5.15e-01 100.0% 42.1%
3968965 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.75 64.0 6.17e-01 100.0% 81.1%
3733266 3352.1.1.19 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › Mannosyl_trans2 0.73 66.0 4.12e-01 100.0% 19.1%
3350101 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.73 61.0 5.00e-01 100.0% 50.3%
4976652 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 66.0 3.96e-01 100.0% 19.6%
3343651 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.72 66.0 4.95e-01 98.8% 58.4%
3578534 6155.1.1.2 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop 0.72 66.0 5.99e-01 100.0% 82.9%
3397045 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 67.0 5.37e-01 100.0% 54.5%
4467738 622.1.1.1 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C 0.72 68.0 6.48e-01 100.0% 90.0%
3423908 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.71 60.0 5.69e-01 92.5% 91.6%
3784442 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 63.0 4.58e-01 98.8% 55.9%
3667486 633.7.1.0 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like 0.71 66.0 4.92e-01 100.0% 58.4%
3257366 133.1.1.1 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF 0.70 63.0 4.51e-01 100.0% 82.1%
4939326 1079.1.1.19 alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › DUF2162 0.70 58.0 4.42e-01 91.3% 48.1%
5067572 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.70 64.0 5.80e-01 100.0% 84.8%
4018653 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 60.0 4.93e-01 100.0% 72.7%
3862034 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.68 59.0 5.80e-01 100.0% 91.8%
3581998 633.23.1.22 alpha bundles › Bromodomain-like › Claudin › Claudin › MARVEL 0.67 62.0 5.07e-01 97.5% 77.8%
3624615 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.67 63.0 5.13e-01 98.8% 78.5%
3792670 633.21.1.10 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › MARVEL 0.67 62.0 5.06e-01 97.5% 79.3%
3883670 604.1.1.7 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_plectin_7 0.67 60.0 5.25e-01 100.0% 81.7%
3314029 633.23.1.32 alpha bundles › Bromodomain-like › Claudin › Claudin › CASP_dom 0.66 59.0 4.65e-01 97.5% 73.0%
3918141 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.66 62.0 5.16e-01 100.0% 83.1%
5036274 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.66 57.0 5.78e-01 98.8% 97.5%
4017010 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.66 60.0 4.93e-01 98.8% 74.3%
3999040 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.66 63.0 4.73e-01 100.0% 100.0%
5062016 604.5.1.0 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.65 57.0 5.38e-01 100.0% 92.0%
3580347 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.65 57.0 5.24e-01 100.0% 87.6%
3382796 109.4.1.446 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MOR2-PAG1_mid 0.64 52.0 3.73e-01 97.5% 29.2%
4933622 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.63 56.0 5.25e-01 98.8% 86.0%
3619004 601.1.1.7 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Talin_IBS2B 0.62 56.0 4.86e-01 97.5% 65.8%
4935676 604.5.1.2 alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › PhoU 0.62 55.0 4.99e-01 100.0% 80.0%
3529785 601.1.2.6 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › Talin_IBS2B 0.60 54.0 4.63e-01 100.0% 66.4%
4601110 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.59 54.0 3.52e-01 98.8% 84.4%
5060908 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.59 53.0 4.29e-01 98.8% 92.6%
3323416 3831.1.1.7 alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › DUF842 0.59 44.0 4.04e-01 80.0% 76.2%
4944284 1075.4.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane 0.58 52.0 3.39e-01 100.0% 79.7%
4028663 545.1.2.0 alpha bundles › Gametocyte protein Pfg27-related › Gametocyte protein Pfg27-related › Sporozoite protein UIS3 soluble domain 0.53 45.0 4.02e-01 95.0% 66.1%