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IMGVR_UViG_3300028169_000108-3300028169-Ga0268279_10045111
Arc-VirIMGVR_UViG_3300028169_000108-3300028169-Ga0268279_10045111
Identity
- Kingdom:
- archaea
Quality
79.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-89
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5wjfA02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.58 | 39.0 | 3.55e-01 | 93.9% | 48.6% |
| 2el8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 39.0 | 3.30e-01 | 73.5% | 62.6% |
| 2jyeA01 | 2.10.25.160 | Mainly Beta › Ribbon › Laminin › Granulin | 0.56 | 39.0 | 3.73e-01 | 75.5% | 75.4% |
| 3thxB04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.53 | 37.0 | 2.86e-01 | 100.0% | 29.7% |
| 2o8mB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 35.0 | 3.26e-01 | 73.5% | 84.8% |
| 4mxwR02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.50 | 31.0 | 2.86e-01 | 73.5% | 42.0% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3624246 | 389.1.3.0 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like | 0.59 | 39.0 | 4.12e-01 | 71.4% | 82.5% |
| 4951472 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.59 | 36.0 | 2.61e-01 | 89.8% | 18.8% |
| 4458171 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.56 | 36.0 | 2.73e-01 | 87.8% | 25.4% |
| 3415064 | 394.1.1.1 ↗ | few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 | 0.54 | 37.0 | 3.73e-01 | 85.7% | 72.0% |
| 4118829 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.53 | 36.0 | 2.75e-01 | 93.9% | 25.0% |
| 3739717 | 318.1.1.1 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 | 0.53 | 36.0 | 3.10e-01 | 77.6% | 41.2% |
| 5038626 | 101.1.2.25 ↗ | alpha arrays › HTH › HTH › winged helix domain › FUR | 0.51 | 41.0 | 3.13e-01 | 100.0% | 53.1% |
| 3868348 | 389.1.3.1 ↗ | few secondary structure elements › EGF-like › EGF-related › TNF receptor-like › TNFR_c6 | 0.51 | 43.0 | 3.88e-01 | 95.9% | 98.6% |
| 4675181 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 36.0 | 3.03e-01 | 77.6% | 53.7% |
| 4453931 | 2.1.1.70 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C | 0.51 | 41.0 | 3.93e-01 | 93.9% | 83.3% |
| 4029546 | 389.1.1.16 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin › EGF_3 | 0.51 | 42.0 | 3.65e-01 | 100.0% | 83.5% |
| 3517758 | 2.1.1.106 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PRS7_OB | 0.50 | 41.0 | 3.53e-01 | 93.9% | 65.0% |
D2
medium
residues 134-187
Domain cluster:
rep: MH598800.1__AXH71660.1__P031_gp39__00039__D66-109
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yzhA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.56 | 42.0 | 2.99e-01 | 81.5% | 75.3% |
| 2dlbA00 | 3.10.20.330 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function YopT | 0.55 | 29.0 | 2.72e-01 | 72.2% | 34.3% |
| 2fauA01 | 2.60.40.640 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 37.0 | 2.78e-01 | 72.2% | 86.8% |
| 1hykA00 | 4.10.760.10 | Few Secondary Structures › Irregular › Agouti Related Protein; Chain A › Agouti domain | 0.53 | 37.0 | 3.97e-01 | 79.6% | 89.1% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.51 | 36.0 | 2.57e-01 | 77.8% | 32.4% |
| 2uwiA02 | 2.10.50.10 | Mainly Beta › Ribbon › Tumor Necrosis Factor Receptor, subunit A; domain 2 › Tumor Necrosis Factor Receptor, subunit A, domain 2 | 0.51 | 34.0 | 3.54e-01 | 72.2% | 100.0% |
| 1d4tA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 35.0 | 3.04e-01 | 77.8% | 83.7% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3909405 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 42.0 | 2.67e-01 | 74.1% | 32.0% |
| 5040136 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.57 | 45.0 | 2.73e-01 | 94.4% | 42.8% |
| 3249369 | 388.1.1.7 ↗ | few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like › FOLN | 0.55 | 32.0 | 3.24e-01 | 79.6% | 52.7% |
| None | — | 0.53 | 44.0 | 3.48e-01 | 100.0% | 75.2% | |
| 4934542 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.52 | 32.0 | 2.84e-01 | 81.5% | 38.8% |
| 3488211 | 387.1.1.0 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related | 0.51 | 38.0 | 3.30e-01 | 83.3% | 95.6% |
D3
medium
residues 188-237