←Back to structures

IMGVR_UViG_3300028175_000027-3300028175-Ga0257117_10007401

Arc-Vir

IMGVR_UViG_3300028175_000027-3300028175-Ga0257117_10007401

Identity

Kingdom:
archaea

Quality

77.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 43-97
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.69 40.0 3.71e-01 96.4% 45.1%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.66 57.0 3.79e-01 98.2% 53.9%
4c23B01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 55.0 3.56e-01 96.4% 25.2%
2d9hA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.61 39.0 3.59e-01 94.5% 44.9%
2yx1A03 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 39.0 2.79e-01 92.7% 20.6%
1b37A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 47.0 3.14e-01 90.9% 95.0%
4ijaA03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 44.0 3.33e-01 89.1% 42.7%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 39.0 2.87e-01 74.5% 79.7%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 40.0 3.40e-01 87.3% 50.0%
1k07A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 45.0 2.91e-01 98.2% 95.4%
2f48A01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 39.0 2.63e-01 90.9% 83.5%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 38.0 3.33e-01 80.0% 55.8%
1knvB00 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.51 43.0 2.73e-01 94.5% 43.6%
4iduB01 1.20.142.20 Mainly Alpha › Up-down Bundle › Poly(ADP-ribose) Polymerase; domain 1 › 0.51 40.0 3.09e-01 87.3% 60.6%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.17e-01 89.1% 87.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3235586 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.71 52.0 3.68e-01 78.2% 82.4%
None — 0.65 55.0 3.46e-01 96.4% 90.6%
3794104 304.28.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.63 49.0 3.27e-01 87.3% 96.4%
5071927 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 38.0 3.81e-01 80.0% 67.3%
4990636 192.2.1.2 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.57 41.0 3.14e-01 76.4% 47.7%
4973612 5.1.2.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.57 39.0 2.41e-01 74.5% 94.0%
4224431 101.1.1.32 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_DBD 0.56 40.0 3.06e-01 80.0% 32.3%
3387027 101.1.1.33 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 44.0 3.28e-01 83.6% 39.2%
3973139 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 42.0 3.15e-01 81.8% 34.1%
4965263 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.54 45.0 3.02e-01 92.7% 88.2%
4962675 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.53 46.0 2.87e-01 96.4% 81.3%
3386602 2484.2.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.53 42.0 3.98e-01 87.3% 81.5%
3886848 377.9.1.1 ↗ few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND 0.53 39.0 3.99e-01 100.0% 81.8%
3350469 604.1.1.164 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM62_C 0.53 39.0 2.58e-01 80.0% 20.9%
3704578 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 40.0 2.88e-01 85.5% 41.1%
3767125 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.52 45.0 2.75e-01 94.5% 30.7%
4262261 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 37.0 3.73e-01 76.4% 74.5%
1411379 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.52 32.0 3.00e-01 78.2% 46.4%
4937104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 41.0 3.40e-01 92.7% 84.8%
4276957 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.50 35.0 3.53e-01 76.4% 72.7%
3737536 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 40.0 2.56e-01 89.1% 46.6%