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IMGVR_UViG_3300028175_000686-3300028175-Ga0257117_100313713
Arc-VirIMGVR_UViG_3300028175_000686-3300028175-Ga0257117_100313713
Identity
- Kingdom:
- archaea
Quality
91.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 32-94
Domain cluster:
rep: IMGVR_UViG_3300009518_000114-3300009518-Ga0116128_100172512__D57-107
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07508.20 best | Recombinase | 24.3 | 4.40e-05 | 85.7% | 45.1% |
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q0iA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.73 | 57.0 | 3.60e-01 | 84.1% | 20.0% |
| 1k78I00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 52.0 | 5.40e-01 | 81.0% | 84.5% |
| 2kvsA00 | 1.10.150.260 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like | 0.67 | 41.0 | 3.83e-01 | 100.0% | 48.8% |
| 3djaA01 | 1.20.920.70 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.67 | 55.0 | 4.25e-01 | 100.0% | 40.0% |
| 1f4qA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.62 | 49.0 | 3.70e-01 | 87.3% | 85.7% |
| 1ug3A02 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.62 | 53.0 | 4.29e-01 | 98.4% | 78.1% |
| 3q23A08 | 1.20.140.110 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.62 | 52.0 | 4.00e-01 | 96.8% | 87.7% |
| 7e84A03 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 43.0 | 3.43e-01 | 73.0% | 97.6% |
| 3ckyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.61 | 53.0 | 4.20e-01 | 100.0% | 71.6% |
| 7m2wE01 | 1.20.120.1900 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Gamma-tubulin complex, C-terminal domain | 0.61 | 52.0 | 3.39e-01 | 100.0% | 93.9% |
| 1dzuP00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.60 | 45.0 | 3.17e-01 | 81.0% | 80.4% |
| 1rylA00 | 3.40.1760.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family | 0.60 | 50.0 | 3.84e-01 | 98.4% | 68.2% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 42.0 | 3.91e-01 | 96.8% | 59.3% |
| 3cuxA02 | 1.20.1220.12 | Mainly Alpha › Up-down Bundle › Malate Synthase G; Chain: A; Domain 4 › Malate synthase, domain III | 0.58 | 49.0 | 4.02e-01 | 96.8% | 69.4% |
| 2cvzA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.58 | 50.0 | 4.01e-01 | 100.0% | 72.7% |
| 1d5rA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.58 | 43.0 | 3.17e-01 | 81.0% | 62.1% |
| 1eg7A02 | 3.30.1510.10 | Alpha Beta › 2-Layer Sandwich › Domain 2, N(10)-formyltetrahydrofolate synthetase › Domain 2, N(10)-formyltetrahydrofolate synthetase | 0.57 | 40.0 | 3.31e-01 | 74.6% | 71.4% |
| 1iurA01 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.56 | 41.0 | 4.12e-01 | 79.4% | 93.7% |
| 2fgyA01 | 1.20.120.1310 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Carboxysome Shell Carbonic Anhydrase, N-terminal helical domain | 0.56 | 42.0 | 3.62e-01 | 84.1% | 65.4% |
| 4c0aA02 | 1.10.1000.11 | Mainly Alpha › Orthogonal Bundle › Arf Nucleotide-binding Site Opener; domain 2 › Arf Nucleotide-binding Site Opener,domain 2 | 0.56 | 42.0 | 3.61e-01 | 88.9% | 61.9% |
| 1xb4B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 42.0 | 4.07e-01 | 85.7% | 76.0% |
| 2cr7A01 | 1.20.1160.11 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › Paired amphipathic helix | 0.55 | 38.0 | 3.87e-01 | 79.4% | 74.6% |
| 3b0pA02 | 1.20.120.1460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 45.0 | 4.31e-01 | 93.7% | 92.0% |
| 5zorA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.54 | 42.0 | 4.05e-01 | 87.3% | 86.3% |
| 4rw0A00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.54 | 46.0 | 3.39e-01 | 98.4% | 88.0% |
| 1g2rA00 | 3.30.1230.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like | 0.54 | 48.0 | 4.21e-01 | 100.0% | 93.6% |
| 1qsdA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 39.0 | 3.32e-01 | 76.2% | 94.1% |
| 2mh3A00 | 4.10.280.10 | Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain | 0.54 | 37.0 | 3.57e-01 | 71.4% | 67.1% |
| 2qkbA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 40.0 | 3.03e-01 | 81.0% | 44.7% |
| 5nl6A02 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 47.0 | 3.92e-01 | 98.4% | 79.6% |
| 1hciA04 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 47.0 | 3.84e-01 | 98.4% | 79.8% |
| 1a5kC02 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.51 | 42.0 | 2.71e-01 | 100.0% | 53.3% |
| 3llkA01 | 1.20.120.1960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain | 0.51 | 40.0 | 3.55e-01 | 90.5% | 85.7% |
| 1fmjA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 43.0 | 2.79e-01 | 100.0% | 68.4% |
| 1l8dA00 | 1.10.287.510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.50 | 42.0 | 3.62e-01 | 96.8% | 58.3% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5032641 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.84 | 78.0 | 6.34e-01 | 100.0% | 60.9% |
| 4969809 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.84 | 77.0 | 6.30e-01 | 100.0% | 60.0% |
| 3957316 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.79 | 60.0 | 5.98e-01 | 95.2% | 78.5% |
| 3962597 | 101.1.3.13 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › Transposase_mut | 0.79 | 60.0 | 5.98e-01 | 95.2% | 78.5% |
| 3958041 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.78 | 60.0 | 5.95e-01 | 95.2% | 78.5% |
| 3956288 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.76 | 67.0 | 5.25e-01 | 100.0% | 57.0% |
| 5030856 | 101.1.1.40 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Recombinase | 0.75 | 67.0 | 5.34e-01 | 100.0% | 54.4% |
| 3290651 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.75 | 62.0 | 4.86e-01 | 90.5% | 45.4% |
| 2982796 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.70 | 57.0 | 3.63e-01 | 88.9% | 20.1% |
| 3380070 | 101.43.1.3 ↗ | alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain › PF26175 | 0.70 | 54.0 | 5.50e-01 | 84.1% | 86.7% |
| 4542384 | 101.1.1.266 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Transposase_mut | 0.69 | 59.0 | 5.87e-01 | 95.2% | 90.8% |
| 3812799 | 101.1.1.291 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › PF26175 | 0.68 | 54.0 | 5.38e-01 | 87.3% | 83.1% |
| 4984959 | 3758.1.1.113 ↗ | alpha bundles › Bacterial hemolysins-like › Bacterial hemolysins › Bacterial hemolysins › Rad50_zn_hook | 0.64 | 46.0 | 2.90e-01 | 100.0% | 14.5% |
| 4008764 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.63 | 53.0 | 4.76e-01 | 90.5% | 95.3% |
| 3509709 | 1015.1.1.4 ↗ | alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › ABC_trans_CmpB | 0.63 | 52.0 | 4.09e-01 | 95.2% | 96.4% |
| 3443035 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 48.0 | 4.15e-01 | 85.7% | 57.1% |
| 3322387 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.62 | 48.0 | 3.65e-01 | 85.7% | 36.9% |
| 3594317 | 603.1.1.1 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin | 0.62 | 40.0 | 3.06e-01 | 88.9% | 29.3% |
| 3441839 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.61 | 48.0 | 4.57e-01 | 85.7% | 83.8% |
| 3905735 | 101.1.2.94 ↗ | alpha arrays › HTH › HTH › winged helix domain › ANAPC2 | 0.61 | 49.0 | 4.48e-01 | 90.5% | 68.2% |
| 4927356 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.60 | 44.0 | 3.73e-01 | 100.0% | 46.7% |
| 3426143 | 101.1.2.386 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_DRP | 0.60 | 46.0 | 3.90e-01 | 85.7% | 50.4% |
| 4118498 | 181.1.1.1 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › SRP54_N | 0.60 | 44.0 | 4.09e-01 | 81.0% | 77.6% |
| 3971349 | 5086.1.1.84 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_MFP_RND | 0.58 | 42.0 | 4.30e-01 | 96.8% | 80.0% |
| 3473827 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.57 | 43.0 | 4.43e-01 | 100.0% | 85.0% |
| 3797372 | 106.1.1.1 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like › Globin | 0.57 | 44.0 | 3.39e-01 | 96.8% | 34.5% |
| 1870424 | 6076.1.1.0 ↗ | alpha arrays › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme › Catalytic cysteine domain in ubiquitin-activating enzyme | 0.56 | 48.0 | 3.38e-01 | 100.0% | 86.8% |
| 4306152 | 148.1.3.203 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF28760 | 0.55 | 43.0 | 3.20e-01 | 84.1% | 80.6% |
| 3740106 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 47.0 | 3.88e-01 | 98.4% | 73.0% |
| 2325490 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.53 | 47.0 | 3.87e-01 | 98.4% | 76.8% |
| 3543893 | 604.1.1.1 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin | 0.53 | 46.0 | 3.76e-01 | 98.4% | 75.0% |
| 3309008 | 375.1.1.246 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rad50_zn_hook | 0.52 | 41.0 | 3.55e-01 | 95.2% | 54.3% |
| 5080738 | 192.15.1.47 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › GvpK | 0.51 | 42.0 | 3.90e-01 | 93.7% | 89.4% |