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IMGVR_UViG_3300028188_000279-3300028188-Ga0257124_100329715

Arc-Vir

IMGVR_UViG_3300028188_000279-3300028188-Ga0257124_100329715

Quality

71.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 374-453_503-592
PDB
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.65 37.0 4.77e-01 76.5% 98.9%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937267 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.85 59.0 7.13e-01 95.3% 100.0%
5033307 70.4.1.0 beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) 0.78 62.0 6.85e-01 100.0% 98.6%
D2 medium residues 212-273
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 51.0 3.96e-01 85.5% 37.2%
1wthA02 3.10.450.190 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 56.0 4.80e-01 93.5% 94.1%
4ifaA01 3.40.33.10 Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP 0.67 55.0 3.57e-01 90.3% 45.5%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 51.0 3.97e-01 85.5% 38.1%
5xrkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.67 53.0 4.01e-01 85.5% 37.6%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.65 58.0 4.16e-01 100.0% 77.0%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.65 55.0 3.89e-01 93.5% 88.0%
3ec4B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.64 44.0 2.99e-01 72.6% 31.8%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 48.0 3.06e-01 83.9% 29.7%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.63 48.0 4.31e-01 82.3% 90.5%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.62 53.0 3.75e-01 93.5% 79.8%
1a6zA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 54.0 3.92e-01 100.0% 76.5%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.61 54.0 3.90e-01 100.0% 77.2%
4g59C02 3.30.500.30 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › 0.60 52.0 3.92e-01 100.0% 78.5%
1zs8A01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.59 52.0 3.79e-01 98.4% 80.1%
3it8D01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 50.0 3.62e-01 96.8% 74.4%
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.57 41.0 3.67e-01 77.4% 61.1%
4joxA00 2.60.270.50 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.57 47.0 3.88e-01 95.2% 72.9%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.57 43.0 3.73e-01 85.5% 67.6%
3o6uC00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.57 44.0 3.55e-01 100.0% 43.7%
3qmfA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.56 49.0 3.89e-01 100.0% 65.7%
4mcxF00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.56 40.0 3.60e-01 77.4% 63.7%
6j7cA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.56 47.0 3.49e-01 95.2% 45.2%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.82e-01 83.9% 90.9%
3owcB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 45.0 3.35e-01 93.5% 94.1%
2q74A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.55 49.0 3.85e-01 100.0% 67.4%
2kzxA00 3.90.1010.20 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.54 43.0 3.47e-01 100.0% 42.7%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.54 46.0 2.94e-01 96.8% 30.2%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 40.0 2.52e-01 85.5% 32.4%
1kzfA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 46.0 3.19e-01 96.8% 44.4%
6t5kC00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 41.0 2.89e-01 90.3% 56.7%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 41.0 2.64e-01 93.5% 46.6%
3hbcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.52 42.0 2.79e-01 98.4% 96.8%
4wjsA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.60e-01 93.5% 46.1%
6wqbA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.30e-01 95.2% 73.6%
5h1kA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.65e-01 93.5% 40.6%
2wpwC00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 40.0 2.69e-01 95.2% 35.1%
4e2aA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 41.0 3.15e-01 96.8% 75.9%
4mveA00 2.40.128.580 Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain 0.51 38.0 3.03e-01 85.5% 72.1%
3i9sA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.16e-01 93.5% 54.0%
3ld2B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 37.0 2.89e-01 83.9% 68.5%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.50 36.0 3.45e-01 79.0% 98.7%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 40.0 3.60e-01 88.7% 91.0%
6m90A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 44.0 2.87e-01 100.0% 38.0%
1je0C00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.50 39.0 2.76e-01 90.3% 70.9%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3494432 77.2.1.1 beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN 0.67 50.0 4.14e-01 82.3% 50.0%
4583801 77.1.1.1 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 0.66 59.0 3.89e-01 100.0% 25.7%
4025709 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.65 50.0 4.95e-01 98.4% 80.0%
3719280 3523.1.1.4 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › MORN 0.65 50.0 2.93e-01 88.7% 11.5%
3520492 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.64 45.0 3.27e-01 72.6% 45.6%
3626881 5084.5.1.33 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.64 57.0 3.66e-01 100.0% 27.5%
1498413 3894.1.1.0 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain 0.63 52.0 4.12e-01 90.3% 63.3%
3994452 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.63 44.0 2.61e-01 72.6% 17.9%
3273079 9.4.1.0 beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.62 49.0 4.34e-01 85.5% 98.9%
3394354 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.61 53.0 4.48e-01 95.2% 87.0%
3240986 331.18.1.7 a+b two layers › TBP-like › C-terminal TBP-like domain of Roc › C-terminal TBP-like domain of Roc › DUF3557 0.61 45.0 3.74e-01 79.0% 66.4%
4031984 3894.1.1.1 beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 0.60 51.0 4.17e-01 100.0% 80.0%
3217309 243.6.1.4 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA 0.60 51.0 4.52e-01 95.2% 94.4%
3241930 881.1.1.20 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3557 0.59 43.0 3.54e-01 79.0% 64.2%
4580919 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.57 43.0 3.99e-01 80.6% 92.5%
4960565 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 44.0 3.19e-01 85.5% 51.9%
3778614 233.1.1.5 a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I_2 0.57 50.0 3.55e-01 100.0% 70.3%
3831652 71.1.1.17 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › PF28435 0.55 49.0 3.68e-01 100.0% 88.6%
1649977 101.15.1.2 alpha arrays › HTH › LysM domain › LysM domain › OapA 0.55 42.0 3.78e-01 83.9% 88.9%
1512998 3953.1.1.1 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N 0.55 42.0 3.85e-01 83.9% 90.6%
3930706 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.52 37.0 3.41e-01 77.4% 56.5%
4014180 708.1.2.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.52 43.0 3.44e-01 90.3% 58.3%
3688272 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 40.0 2.97e-01 96.8% 57.6%
4980010 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.50 39.0 3.03e-01 91.9% 66.1%
D3 medium residues 330-372_454-502
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.70 32.0 3.83e-01 84.8% 63.3%
4ncbA01 3.30.530.60 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.62 43.0 3.70e-01 90.2% 45.9%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.60 34.0 4.02e-01 94.6% 81.0%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.55 32.0 3.81e-01 75.0% 88.1%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.55 33.0 4.06e-01 76.1% 98.2%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 4.11e-01 84.8% 77.6%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.06e-01 75.0% 75.8%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 38.0 3.41e-01 73.9% 95.3%
6s5wA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 34.0 3.39e-01 71.7% 61.5%
4wgkA02 2.60.40.2300 Mainly Beta › Sandwich › Immunoglobulin-like › Neutral/alkaline non-lysosomal ceramidase, C-terminal domain 0.53 36.0 3.24e-01 71.7% 69.9%
1w18A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 2.88e-01 98.9% 50.2%
3anzC00 2.70.240.10 Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA 0.52 39.0 2.82e-01 82.6% 37.1%
5cyxA03 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 35.0 3.34e-01 70.7% 63.3%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.51 40.0 3.56e-01 90.2% 73.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3181778 3385.1.1.1 beta barrels › Allergen Alt a 1 › Allergen Alt a 1 › Allergen Alt a 1 › AltA1 0.56 42.0 3.73e-01 82.6% 81.4%
4951151 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.56 49.0 3.28e-01 95.7% 42.2%
4939678 11.1.1.138 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › NPCBM_assoc 0.56 39.0 3.63e-01 72.8% 67.8%
4057053 314.1.1.9 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_His 0.55 47.0 3.26e-01 96.7% 82.1%
5010503 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.78e-01 73.9% 70.5%
2780879 1172.1.1.1 beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 0.53 32.0 3.02e-01 90.2% 47.7%
4942841 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.53 46.0 4.28e-01 94.6% 83.5%
4664562 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.53 37.0 3.07e-01 73.9% 85.7%
None 0.52 38.0 2.47e-01 76.1% 84.0%
4961867 2484.1.1.18 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 0.52 41.0 2.79e-01 88.0% 28.9%
3727125 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 36.0 3.42e-01 73.9% 67.0%
3718960 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.51 39.0 3.08e-01 82.6% 71.9%
4025435 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.51 40.0 3.29e-01 89.1% 69.5%
3706802 5.1.3.116 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_KLHDC2_KLHL20_DRC7 0.50 44.0 3.04e-01 100.0% 42.9%