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IMGVR_UViG_3300028189_000691-3300028189-Ga0257127_10020538
Arc-VirIMGVR_UViG_3300028189_000691-3300028189-Ga0257127_10020538
Identity
- Kingdom:
- archaea
Quality
79.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-77
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k2tA01 | 3.30.505.50 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain | 0.67 | 42.0 | 4.90e-01 | 87.0% | 95.7% |
| 3mazA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.66 | 43.0 | 3.83e-01 | 76.8% | 46.5% |
| 7szeB01 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.64 | 38.0 | 3.31e-01 | 84.1% | 37.4% |
| 2cg7A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.61 | 37.0 | 4.23e-01 | 73.9% | 89.1% |
| 6l4lA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 41.0 | 3.52e-01 | 88.4% | 41.4% |
| 2azpA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.61 | 48.0 | 3.72e-01 | 88.4% | 53.4% |
| 2cg7A02 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.61 | 35.0 | 4.15e-01 | 71.0% | 88.6% |
| 3a2eA00 | 3.30.430.20 | Alpha Beta › 2-Layer Sandwich › Killer Toxin P4; Chain A › Gnk2 domain, C-X8-C-X2-C motif | 0.58 | 48.0 | 4.20e-01 | 94.2% | 83.3% |
| 2ffgA00 | 3.30.720.20 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 | 0.58 | 40.0 | 3.86e-01 | 81.2% | 63.7% |
| 3mc6A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.57 | 40.0 | 3.29e-01 | 73.9% | 58.8% |
| 1a31A03 | 3.90.15.10 | Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 | 0.57 | 44.0 | 3.41e-01 | 100.0% | 38.0% |
| 1p0zA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.55 | 47.0 | 3.90e-01 | 100.0% | 92.4% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 43.0 | 4.13e-01 | 89.9% | 75.3% |
| 4exrA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 36.0 | 3.64e-01 | 76.8% | 70.4% |
| 3nhqC03 | 3.30.450.270 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PHY domain | 0.51 | 40.0 | 3.30e-01 | 91.3% | 45.5% |
| 6qm7M00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.50 | 40.0 | 3.03e-01 | 98.6% | 82.7% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3307036 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.74 | 46.0 | 5.14e-01 | 89.9% | 86.0% |
| 4554426 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.70 | 42.0 | 4.70e-01 | 81.2% | 77.8% |
| 2771756 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.70 | 42.0 | 4.12e-01 | 85.5% | 55.4% |
| 3282814 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.70 | 42.0 | 4.05e-01 | 81.2% | 52.5% |
| 4588602 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.68 | 42.0 | 4.77e-01 | 82.6% | 86.0% |
| 4630692 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.68 | 47.0 | 3.56e-01 | 88.4% | 31.2% |
| 3289024 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.67 | 41.0 | 3.68e-01 | 81.2% | 44.2% |
| 3954395 | 3097.1.1.0 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y | 0.67 | 41.0 | 4.51e-01 | 81.2% | 76.4% |
| 3961965 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.67 | 41.0 | 4.21e-01 | 81.2% | 64.6% |
| 4032931 | 286.1.1.5 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › CntK_N | 0.66 | 46.0 | 3.84e-01 | 88.4% | 40.8% |
| 4408783 | 223.1.1.45 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GdpP_PAS | 0.66 | 50.0 | 4.52e-01 | 88.4% | 60.0% |
| 1177793 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.65 | 47.0 | 3.67e-01 | 91.3% | 35.6% |
| 4516678 | 286.1.1.1 ↗ | a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase | 0.62 | 45.0 | 3.65e-01 | 88.4% | 38.6% |
| 223811 | 3583.1.1.1 ↗ | few secondary structure elements › FusB family Zn-binding domain › FusB family Zn-binding domain › FusB family Zn-binding domain › FBP_C | 0.61 | 39.0 | 3.27e-01 | 89.9% | 37.2% |
| 5045301 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.58 | 51.0 | 4.03e-01 | 100.0% | 85.3% |
| 1150523 | 66.1.1.0 ↗ | beta sandwiches › ISP domain › ISP domain › ISP domain | 0.58 | 42.0 | 4.07e-01 | 100.0% | 67.9% |
| 3259155 | 376.1.1.43 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PRT6_C | 0.58 | 46.0 | 3.83e-01 | 87.0% | 48.0% |
| 4111045 | 243.1.1.64 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_2nd | 0.58 | 46.0 | 4.12e-01 | 100.0% | 59.0% |
| 4108957 | 241.1.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone | 0.57 | 42.0 | 3.28e-01 | 78.3% | 49.0% |
| 4940816 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.56 | 36.0 | 3.27e-01 | 92.8% | 46.3% |
| 4676268 | 223.1.1.35 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 | 0.56 | 49.0 | 3.21e-01 | 100.0% | 37.8% |
| 3324429 | 239.3.1.1 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain › Fasciclin | 0.56 | 49.0 | 3.84e-01 | 100.0% | 56.7% |
| 5082716 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 44.0 | 3.98e-01 | 89.9% | 73.0% |
| 3961969 | 3097.1.1.1 ↗ | a+b two layers › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosome-associated factor Y › Ribosom_S30AE_C | 0.55 | 35.0 | 3.70e-01 | 81.2% | 73.3% |
| 5013363 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.54 | 47.0 | 3.87e-01 | 100.0% | 77.7% |
| 5047293 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 46.0 | 3.76e-01 | 95.7% | 56.2% |
| 3594135 | 2008.2.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like | 0.53 | 35.0 | 3.23e-01 | 73.9% | 48.0% |
| 4129336 | 3675.1.1.0 ↗ | a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain | 0.53 | 39.0 | 3.18e-01 | 82.6% | 52.7% |
| 3429484 | 109.4.1.822 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF6817 | 0.53 | 45.0 | 2.79e-01 | 94.2% | 41.3% |
| 4237254 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.53 | 43.0 | 4.07e-01 | 95.7% | 84.7% |
| 5004031 | 873.1.1.1 ↗ | a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R | 0.53 | 43.0 | 3.45e-01 | 100.0% | 56.4% |
| 2816648 | 3398.1.1.2 ↗ | a/b three-layered sandwiches › STING C-terminal domain › STING C-terminal domain › STING C-terminal domain › prok_STING | 0.52 | 45.0 | 3.47e-01 | 100.0% | 92.8% |
| 4208450 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 34.0 | 3.58e-01 | 88.4% | 75.0% |
| 5014246 | 223.1.1.6 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 | 0.52 | 38.0 | 3.56e-01 | 84.1% | 63.2% |