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IMGVR_UViG_3300028189_001522-3300028189-Ga0257127_10064572

Arc-Vir

IMGVR_UViG_3300028189_001522-3300028189-Ga0257127_10064572

Quality

89.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-143
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00293.35 best NUDIX 73.1 3.20e-20 93.4% 94.0%
D2 high residues 148-208
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF21906.3 best WHD_NrtR 88.0 5.10e-25 100.0% 98.4%
PF19368.6 WHD_AraR 44.4 2.20e-11 100.0% 75.6%
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3gz5B02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.92 82.0 7.62e-01 100.0% 78.4%
5deqB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.91 86.0 7.58e-01 100.0% 73.5%
5f7qC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 60.0 5.75e-01 100.0% 80.0%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 63.0 5.26e-01 100.0% 58.1%
4esbA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.14e-01 100.0% 58.3%
4ejoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 4.81e-01 100.0% 50.9%
1vtnC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 5.23e-01 100.0% 64.7%
5h20A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.02e-01 100.0% 57.3%
2ly1A01 3.30.420.610 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › LOTUS domain-like 0.69 56.0 5.22e-01 100.0% 70.9%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 60.0 5.25e-01 100.0% 63.5%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 55.0 4.25e-01 100.0% 39.4%
6abqB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 58.0 4.94e-01 100.0% 56.6%
3u1dB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 59.0 4.56e-01 100.0% 43.4%
2dqlA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 4.81e-01 100.0% 53.9%
3elkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 57.0 4.84e-01 100.0% 56.2%
6kf9G01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.90e-01 100.0% 68.3%
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 57.0 5.08e-01 100.0% 72.5%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 51.0 4.41e-01 100.0% 52.4%
1dp7P00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 56.0 5.23e-01 100.0% 85.5%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 54.0 4.45e-01 100.0% 53.3%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 53.0 4.81e-01 100.0% 69.0%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 52.0 4.27e-01 100.0% 47.5%
3c18A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 5.11e-01 93.4% 96.5%
3l9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 54.0 4.84e-01 100.0% 69.7%
4kt5C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 51.0 4.62e-01 100.0% 68.2%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 46.0 4.08e-01 100.0% 56.2%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.27e-01 100.0% 92.7%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 48.0 4.00e-01 100.0% 53.0%
3mr7A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.56 41.0 3.05e-01 82.0% 93.6%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.54 42.0 3.94e-01 95.1% 67.1%
2e5vA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 40.0 2.70e-01 88.5% 93.5%
4clfA02 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 40.0 3.01e-01 91.8% 69.6%
3owcB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 37.0 2.85e-01 83.6% 80.0%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.51 38.0 3.02e-01 82.0% 77.4%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.51 42.0 3.91e-01 100.0% 78.8%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2056822 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.91 85.0 7.83e-01 100.0% 80.3%
2056399 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.90 82.0 7.56e-01 100.0% 78.9%
3960477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.89 72.0 7.09e-01 86.9% 84.6%
3953987 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.89 79.0 7.17e-01 96.7% 76.2%
3972430 101.1.2.213 alpha arrays › HTH › HTH › winged helix domain › NrtR_WHD 0.85 77.0 7.16e-01 100.0% 84.0%
3282970 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 65.0 6.48e-01 100.0% 95.4%
3281274 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.76 63.0 5.78e-01 100.0% 70.0%
5035685 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.76 67.0 5.33e-01 100.0% 50.8%
5058454 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 67.0 5.97e-01 100.0% 70.6%
4304354 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.74 61.0 5.87e-01 100.0% 80.0%
4547759 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.74 60.0 5.80e-01 100.0% 80.0%
5077356 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 64.0 5.11e-01 100.0% 56.8%
5050129 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.73 63.0 5.29e-01 100.0% 64.5%
5013440 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 62.0 4.76e-01 100.0% 41.4%
4930418 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.73 63.0 5.51e-01 100.0% 63.2%
4960288 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 64.0 4.64e-01 100.0% 36.0%
4556736 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.73 62.0 5.99e-01 100.0% 84.3%
5072114 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 61.0 4.64e-01 100.0% 39.3%
4978533 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 61.0 4.83e-01 100.0% 48.1%
4999532 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.72 62.0 4.19e-01 100.0% 26.8%
4948099 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 63.0 5.19e-01 100.0% 65.5%
4944051 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 4.47e-01 100.0% 35.3%
5072200 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 60.0 5.05e-01 100.0% 56.2%
5035522 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 61.0 5.14e-01 100.0% 57.1%
154263 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 60.0 5.14e-01 100.0% 58.3%
5064203 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.17e-01 100.0% 63.3%
5045747 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 61.0 5.44e-01 100.0% 70.0%
4986012 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 56.0 3.91e-01 100.0% 26.2%
149637 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.71 58.0 4.81e-01 100.0% 50.9%
3963083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 4.80e-01 100.0% 47.4%
4996031 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 5.53e-01 100.0% 71.8%
4971297 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 4.68e-01 100.0% 51.4%
3666424 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 61.0 4.94e-01 100.0% 52.5%
2036621 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.70 59.0 5.02e-01 100.0% 57.3%
4978419 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.70 55.0 5.18e-01 100.0% 72.0%
4975130 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.70 61.0 5.29e-01 100.0% 64.2%
5014942 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 59.0 5.70e-01 100.0% 86.8%
3488429 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.69 59.0 4.19e-01 100.0% 31.9%
4120250 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 58.0 5.36e-01 100.0% 73.8%
5075194 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 4.61e-01 100.0% 48.7%
3956796 101.1.2.49 alpha arrays › HTH › HTH › winged helix domain › PadR,Vir_act_alpha_C 0.69 60.0 4.29e-01 100.0% 33.5%
3269500 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.13e-01 100.0% 62.6%
2409292 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 56.0 4.81e-01 100.0% 55.8%
3485716 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.68 58.0 4.11e-01 100.0% 31.1%
5005164 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.68 60.0 4.99e-01 100.0% 63.9%
4012917 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.12e-01 100.0% 66.3%
3278037 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 59.0 4.16e-01 100.0% 32.8%
5052844 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.68 56.0 3.90e-01 100.0% 27.8%
3501318 101.1.2.394 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1 0.68 59.0 3.63e-01 100.0% 17.4%
4928953 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 54.0 4.89e-01 100.0% 64.7%
5076211 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 54.0 4.51e-01 100.0% 50.0%
3498779 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.67 59.0 5.34e-01 100.0% 81.2%
3287678 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.67 54.0 5.06e-01 100.0% 71.2%
4999286 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 58.0 4.22e-01 100.0% 35.0%
4983914 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.67 54.0 5.05e-01 100.0% 71.2%
3281879 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 59.0 4.23e-01 100.0% 35.6%
4978412 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 59.0 4.26e-01 100.0% 36.0%
4957079 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 52.0 4.68e-01 100.0% 60.0%
3286277 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 58.0 4.18e-01 100.0% 36.1%
5025840 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 4.93e-01 100.0% 68.0%
5029778 101.1.2.43 alpha arrays › HTH › HTH › winged helix domain › Pox_D5 0.66 58.0 5.14e-01 100.0% 74.4%
4969221 109.4.1.198 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_12 0.66 57.0 3.65e-01 100.0% 20.3%
5081315 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 57.0 5.37e-01 100.0% 85.3%
3935690 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.65 55.0 4.46e-01 100.0% 63.8%
4948474 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 5.16e-01 100.0% 82.9%
4957685 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.46e-01 100.0% 55.8%
5082509 101.1.2.31 alpha arrays › HTH › HTH › winged helix domain › TFIIE_alpha 0.65 56.0 4.45e-01 100.0% 46.9%
1839917 101.1.2.171 alpha arrays › HTH › HTH › winged helix domain › HTH_52 0.65 54.0 5.29e-01 100.0% 88.1%
3889562 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 56.0 4.64e-01 100.0% 84.5%
4994432 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 53.0 4.51e-01 100.0% 55.2%
3177239 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.64 56.0 4.39e-01 100.0% 48.1%
5082704 375.1.1.179 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.63 54.0 3.85e-01 100.0% 31.3%
3670673 101.1.2.386 alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.63 54.0 4.55e-01 100.0% 56.4%
5049103 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 53.0 5.06e-01 100.0% 82.7%
5001098 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.82e-01 100.0% 66.7%
4947375 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 45.0 4.24e-01 100.0% 61.3%
3184318 304.7.1.2 a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Inhibitor_I9 0.62 36.0 3.25e-01 100.0% 41.2%
3883278 101.1.2.34 alpha arrays › HTH › HTH › winged helix domain › RFX_DNA_binding 0.62 54.0 4.74e-01 100.0% 68.4%
5050784 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.64e-01 100.0% 66.7%
5064977 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 52.0 4.87e-01 100.0% 86.3%
3483770 101.1.2.271 alpha arrays › HTH › HTH › winged helix domain › B-block_TFIIIC 0.62 52.0 3.92e-01 100.0% 38.2%
5076562 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 53.0 4.59e-01 100.0% 74.0%
5045522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 3.41e-01 100.0% 23.7%
5008022 101.1.2.892 alpha arrays › HTH › HTH › winged helix domain › ArsR 0.62 51.0 4.36e-01 100.0% 57.0%
3633871 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 49.0 3.53e-01 100.0% 34.9%
4478358 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 48.0 4.15e-01 100.0% 87.6%
4940432 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.34e-01 100.0% 70.0%
3696062 2484.1.1.2 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin 0.55 39.0 2.28e-01 75.4% 64.1%
3187043 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 45.0 4.04e-01 100.0% 83.3%
4980535 101.1.2.914 alpha arrays › HTH › HTH › winged helix domain › DUF6015 0.51 38.0 3.41e-01 100.0% 54.7%
143797 101.1.2.149 alpha arrays › HTH › HTH › winged helix domain › Costars 0.51 42.0 3.97e-01 100.0% 82.7%