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IMGVR_UViG_3300028276_000202-3300028276-Ga0268282_100241312

Arc-Vir

IMGVR_UViG_3300028276_000202-3300028276-Ga0268282_100241312

Quality

41.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 374-458
PDB
D2 medium residues 228-361
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o7dC02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.75 42.0 5.08e-01 70.1% 83.1%
2blfA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.66 42.0 4.53e-01 71.6% 75.4%
1imhC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 42.0 4.63e-01 71.6% 84.0%
2y7lA02 2.60.40.2430 Mainly Beta › Sandwich › Immunoglobulin-like › Agglutinin-like protein, N-terminal domain, N2 subdomain 0.62 42.0 4.03e-01 72.4% 60.3%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 42.0 4.50e-01 73.9% 81.2%
4m8rA01 2.60.40.3920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 40.0 4.50e-01 73.9% 86.4%
1k42A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 39.0 3.69e-01 74.6% 51.8%
5c86A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 4.47e-01 73.9% 88.1%
4bfoA00 2.60.40.2440 Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain 0.60 38.0 4.14e-01 71.6% 79.2%
1k12A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 38.0 3.65e-01 73.1% 54.4%
7wqxA01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.59 35.0 3.82e-01 71.6% 70.8%
1pgsA01 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.59 41.0 4.17e-01 72.4% 75.6%
3ptyA02 2.60.120.940 Mainly Beta › Sandwich › Jelly Rolls › EmbC, C-terminal domain, subdomain 2 0.59 42.0 3.82e-01 73.1% 78.1%
2cdoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 42.0 4.16e-01 74.6% 80.4%
2vm9A02 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 4.47e-01 72.4% 96.9%
4u33A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 4.29e-01 73.1% 85.6%
3isrA02 2.60.40.2250 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 33.0 3.77e-01 70.9% 76.0%
1p8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 39.0 4.00e-01 73.1% 72.0%
2ccvA00 2.60.40.2080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 4.41e-01 71.6% 100.0%
2df7A02 2.60.120.660 Mainly Beta › Sandwich › Jelly Rolls › icosahedral virus 0.56 40.0 3.95e-01 73.1% 70.0%
5aca300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.55 41.0 3.46e-01 76.1% 74.8%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.55 40.0 3.87e-01 75.4% 100.0%
1ix2A00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 37.0 4.13e-01 71.6% 89.2%
3nkgA00 2.60.120.790 Mainly Beta › Sandwich › Jelly Rolls › 0.55 38.0 3.58e-01 71.6% 100.0%
4kq7A01 2.60.120.1390 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF2961 0.55 38.0 3.60e-01 70.9% 63.6%
7d9cA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.85e-01 71.6% 72.1%
3okxB00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.54 41.0 3.98e-01 79.1% 85.2%
1wzlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.85e-01 73.9% 76.0%
1j0hA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 37.0 3.85e-01 73.1% 75.2%
4gwmA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 42.0 3.98e-01 83.6% 87.8%
4xvhA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 33.0 3.68e-01 74.6% 76.6%
2nv4A00 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.54 41.0 4.12e-01 79.9% 97.7%
3ciaA01 2.60.40.1730 Mainly Beta › Sandwich › Immunoglobulin-like › tricorn interacting facor f3 domain 0.54 34.0 3.14e-01 72.4% 46.2%
1alyA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 37.0 3.61e-01 70.1% 76.0%
4zchA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 3.85e-01 73.1% 78.5%
1m06G00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 4.22e-01 97.8% 85.6%
1mec100 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.53 38.0 3.03e-01 73.9% 65.7%
4madA03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 36.0 3.64e-01 74.6% 70.1%
3wirA01 2.70.98.40 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain 0.52 37.0 3.02e-01 73.1% 47.1%
3h7jA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 35.0 3.81e-01 80.6% 83.6%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 3.70e-01 79.1% 83.2%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.51 36.0 3.87e-01 85.1% 86.5%
2m5sA00 2.40.30.240 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 37.0 3.82e-01 76.1% 96.8%
1x8mA01 2.60.120.520 Mainly Beta › Sandwich › Jelly Rolls › pectin degrading enzyme 5-keto 4- deoxyuronate isomerase, domain 1 0.50 36.0 3.79e-01 79.1% 82.0%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.50 32.0 3.24e-01 72.4% 62.8%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3901851 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.79 47.0 5.22e-01 73.9% 72.7%
5035134 12.1.1.114 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF2341 0.78 60.0 6.32e-01 85.8% 88.3%
5035178 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.75 59.0 6.45e-01 80.6% 100.0%
3864111 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.73 47.0 4.65e-01 76.1% 61.4%
5035837 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.72 47.0 4.84e-01 75.4% 69.6%
3214876 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.72 40.0 4.58e-01 71.6% 73.0%
3414624 4081.1.1.7 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Ribophorin_I 0.68 42.0 3.78e-01 72.4% 45.6%
4971701 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.68 36.0 4.15e-01 72.4% 69.0%
3489835 11.1.5.94 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.66 45.0 4.01e-01 72.4% 50.3%
3176910 11.1.1.151 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Candida_ALS_N 0.66 45.0 4.30e-01 72.4% 59.7%
3936404 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.65 38.0 4.30e-01 70.1% 76.0%
4015802 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.65 37.0 4.01e-01 70.9% 66.4%
3569095 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.64 38.0 3.91e-01 71.6% 60.8%
3250384 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.64 47.0 4.29e-01 79.1% 57.2%
3616420 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.64 47.0 4.20e-01 76.9% 93.7%
4550201 10.2.1.0 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.63 45.0 3.22e-01 72.4% 28.7%
3929117 11.1.5.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Adap_comp_sub 0.63 37.0 4.04e-01 72.4% 69.1%
3289166 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.63 38.0 3.98e-01 70.9% 65.8%
4243510 10.2.1.5 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide 0.62 44.0 3.67e-01 73.1% 45.8%
3960488 10.20.1.0 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease 0.62 37.0 3.96e-01 70.9% 66.4%
3324862 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.61 43.0 4.62e-01 71.6% 88.7%
3595568 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 38.0 4.28e-01 70.1% 82.0%
3998176 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.61 40.0 3.94e-01 71.6% 60.7%
3206484 11.1.5.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.61 42.0 4.28e-01 70.1% 83.1%
3869023 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.60 42.0 3.59e-01 72.4% 47.9%
3198068 11.1.1.122 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set 0.59 41.0 4.49e-01 71.6% 89.1%
3253503 4182.1.1.2 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › H_lectin 0.58 40.0 4.57e-01 72.4% 98.9%
3554445 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.58 41.0 3.85e-01 73.9% 74.7%
4424312 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.58 40.0 3.88e-01 71.6% 62.6%
3974305 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.57 35.0 3.74e-01 70.9% 66.7%
3404052 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.57 40.0 3.99e-01 77.6% 68.6%
3894462 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.57 37.0 3.54e-01 73.9% 54.4%
3538609 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.57 40.0 3.92e-01 73.9% 66.2%
3555892 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.57 41.0 3.78e-01 73.1% 77.1%
5043304 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 39.0 4.15e-01 71.6% 79.2%
3925833 4081.1.1.0 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related 0.57 40.0 3.45e-01 73.1% 45.6%
3583804 11.1.5.94 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 0.57 39.0 3.59e-01 72.4% 52.8%
3781122 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.56 41.0 3.73e-01 76.1% 56.1%
4289881 10.32.1.17 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Allantoicase 0.56 40.0 3.80e-01 73.1% 80.0%
4426314 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.56 40.0 3.95e-01 74.6% 68.3%
5069244 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 4.08e-01 70.1% 81.7%
3583509 10.32.1.172 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DDR1-2_DS-like 0.55 38.0 3.54e-01 73.1% 54.3%
3398675 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.55 41.0 4.45e-01 78.4% 98.3%
3891946 10.32.1.6 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › P_proprotein 0.55 40.0 3.64e-01 75.4% 86.1%
3232127 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 39.0 3.65e-01 74.6% 68.6%
5064146 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 39.0 3.64e-01 72.4% 60.0%
4551221 11.1.1.46 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha-amylase_N 0.54 37.0 3.81e-01 72.4% 73.6%
3707025 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 38.0 3.70e-01 73.1% 65.8%
5081460 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 40.0 3.85e-01 83.6% 66.9%
3617437 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.53 31.0 3.31e-01 71.6% 63.3%
3520927 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.53 35.0 3.04e-01 72.4% 41.4%
4980441 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 36.0 4.18e-01 73.9% 98.9%
3671695 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.40e-01 71.6% 82.8%
3211095 10.32.1.28 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.53 38.0 3.51e-01 73.9% 65.9%
3728657 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 35.0 4.10e-01 72.4% 100.0%
3690254 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 35.0 4.09e-01 74.6% 100.0%
4937249 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 38.0 3.72e-01 73.9% 82.8%
5081459 10.1.2.181 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › CBM_4_9 0.52 41.0 3.93e-01 85.1% 87.5%
3998726 10.4.1.1 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB 0.52 33.0 3.50e-01 70.9% 71.3%
3699180 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.52 38.0 3.96e-01 78.4% 94.4%
1769854 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.51 34.0 3.56e-01 78.4% 73.6%
4939996 1.1.7.46 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SMUBP-2_HCS1_1B 0.51 38.0 4.16e-01 80.6% 100.0%
3955793 10.20.1.2 beta sandwiches › jelly-roll › Jelly-roll domain in cysteine protease › Jelly-roll domain in cysteine protease › Bact_transglu_N 0.51 31.0 3.19e-01 70.9% 59.3%
5002155 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.50 35.0 3.93e-01 79.1% 96.0%
4927390 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 38.0 4.04e-01 84.3% 90.0%