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IMGVR_UViG_3300028277_000346-3300028277-Ga0257116_100845311

Arc-Vir

IMGVR_UViG_3300028277_000346-3300028277-Ga0257116_100845311

Quality

94.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-52
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jcvA00 2.40.260.10 Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase 0.84 59.0 3.93e-01 75.0% 48.6%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 49.0 4.83e-01 70.8% 72.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 50.0 4.41e-01 72.9% 58.3%
1y14D02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 49.0 4.07e-01 75.0% 98.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 48.0 4.53e-01 72.9% 62.7%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.70 49.0 4.02e-01 75.0% 43.0%
5j39A01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 48.0 3.59e-01 75.0% 86.5%
3b5mA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.68 50.0 3.77e-01 79.2% 51.3%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.67 48.0 3.67e-01 79.2% 68.0%
2cqoA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 49.0 3.98e-01 79.2% 87.0%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.66 45.0 3.72e-01 72.9% 43.8%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 3.33e-01 77.1% 29.1%
1xqbA01 2.40.30.70 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like 0.65 46.0 3.68e-01 79.2% 48.6%
2qggA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.65 48.0 4.10e-01 83.3% 88.0%
2z7rA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 44.0 3.76e-01 72.9% 79.8%
1dfuP00 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.64 45.0 3.72e-01 77.1% 42.6%
4mtnA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 3.98e-01 70.8% 100.0%
3mlqH00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 41.0 4.31e-01 72.9% 73.8%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.63 42.0 3.12e-01 70.8% 26.6%
2c35B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 45.0 3.71e-01 77.1% 97.8%
2efiA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 44.0 3.52e-01 75.0% 75.0%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.62 42.0 3.93e-01 72.9% 54.2%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.62 45.0 3.57e-01 77.1% 37.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 3.87e-01 79.2% 55.3%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 42.0 3.10e-01 72.9% 32.5%
7aooB01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 42.0 3.05e-01 77.1% 88.3%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 44.0 4.04e-01 79.2% 58.5%
2jwyA01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.60 46.0 3.52e-01 93.8% 81.5%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 40.0 3.33e-01 70.8% 40.9%
5lm7A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 40.0 3.57e-01 72.9% 88.5%
4esqA00 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.59 41.0 2.79e-01 72.9% 19.1%
2mc2A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 42.0 2.85e-01 81.2% 92.2%
6f2mA02 2.40.30.290 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.58 45.0 3.73e-01 85.4% 83.9%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.58 41.0 3.56e-01 81.2% 97.8%
4ympA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 39.0 3.10e-01 77.1% 39.3%
2ynaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 39.0 3.36e-01 83.3% 43.2%
1xg9A02 3.10.25.20 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › 0.56 44.0 4.12e-01 91.7% 100.0%
2wj6A01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 40.0 2.76e-01 81.2% 30.4%
3wpwA00 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.55 40.0 2.96e-01 81.2% 88.6%
6aeoB01 3.30.1330.60 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › OmpA-like domain 0.54 39.0 2.97e-01 81.2% 94.1%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 40.0 2.85e-01 83.3% 86.4%
7wlvF02 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.53 33.0 2.69e-01 72.9% 32.6%
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 39.0 2.85e-01 83.3% 56.8%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.52 35.0 2.63e-01 75.0% 23.5%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.52 37.0 3.17e-01 81.2% 56.2%
3g7dA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 36.0 2.90e-01 81.2% 83.9%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.51 39.0 2.73e-01 87.5% 60.4%
2jysA00 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.50 32.0 2.71e-01 79.2% 31.9%
3w9iA08 3.30.2090.10 Alpha Beta › 2-Layer Sandwich › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains › Multidrug efflux transporter AcrB TolC docking domain; DN and DC subdomains 0.50 31.0 2.61e-01 72.9% 33.7%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5020511 3338.2.1.0 a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB 0.80 57.0 4.24e-01 75.0% 51.3%
3176450 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.73 53.0 4.10e-01 79.2% 37.6%
4438946 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 49.0 4.10e-01 72.9% 45.9%
4682440 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 49.0 3.93e-01 72.9% 41.1%
3983246 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 49.0 3.91e-01 70.8% 35.8%
4267752 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 49.0 3.92e-01 72.9% 40.0%
4381495 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.71 49.0 3.97e-01 72.9% 43.3%
5000162 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.70 48.0 3.75e-01 72.9% 73.3%
3553166 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 48.0 3.54e-01 72.9% 63.2%
3622139 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 48.0 3.95e-01 72.9% 41.1%
1567496 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 48.0 4.54e-01 72.9% 64.9%
3966626 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 47.0 3.86e-01 72.9% 43.3%
4229140 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.68 47.0 3.92e-01 75.0% 47.8%
5052170 1.1.8.9 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.68 48.0 3.72e-01 77.1% 45.5%
4063137 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 47.0 3.89e-01 75.0% 46.7%
3740208 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 46.0 4.22e-01 72.9% 55.4%
3257350 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.25e-01 83.3% 95.6%
5081561 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 47.0 4.01e-01 77.1% 45.0%
4493188 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.67 45.0 3.70e-01 72.9% 42.1%
3510786 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.66 45.0 4.15e-01 72.9% 55.4%
4391995 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 45.0 3.82e-01 72.9% 45.9%
4214180 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 47.0 3.78e-01 75.0% 42.1%
4188663 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.66 45.0 3.68e-01 72.9% 41.1%
4963006 4.1.1.490 beta barrels › SH3 › SH3 › SH3 › PF26269 0.66 46.0 3.90e-01 75.0% 47.1%
4026958 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 48.0 4.62e-01 79.2% 70.9%
4055193 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 45.0 3.64e-01 72.9% 41.1%
4138546 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.65 44.0 3.70e-01 72.9% 43.3%
4399542 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 43.0 3.61e-01 72.9% 44.4%
4353877 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 44.0 3.62e-01 75.0% 43.2%
4203993 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.63 45.0 3.66e-01 77.1% 47.4%
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.63 44.0 4.14e-01 75.0% 60.0%
4937389 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.62 43.0 3.31e-01 72.9% 36.4%
4636051 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 43.0 3.45e-01 72.9% 49.5%
4042679 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.62 43.0 3.67e-01 75.0% 48.2%
5066224 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.62 42.0 3.44e-01 70.8% 37.8%
3279470 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 44.0 3.67e-01 81.2% 42.2%
4872438 239.1.1.5 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C 0.61 44.0 4.09e-01 81.2% 71.9%
4069543 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.61 46.0 4.00e-01 83.3% 65.3%
4946634 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.61 43.0 3.59e-01 77.1% 41.1%
3409587 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.61 42.0 3.51e-01 75.0% 43.3%
4619658 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 42.0 3.43e-01 72.9% 42.1%
4208972 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 41.0 3.34e-01 72.9% 40.0%
4132820 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.60 41.0 3.27e-01 72.9% 48.6%
3419351 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.59 40.0 3.71e-01 70.8% 52.3%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.59 43.0 3.59e-01 79.2% 48.2%
4286344 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.59 40.0 3.34e-01 72.9% 46.3%
3744517 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.59 40.0 3.00e-01 72.9% 29.2%
3709820 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.58 44.0 3.46e-01 81.2% 41.0%
4425722 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.58 39.0 3.30e-01 72.9% 45.6%
4269861 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 42.0 3.63e-01 83.3% 48.8%
5048423 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 42.0 3.22e-01 75.0% 31.3%
4666540 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.57 40.0 3.41e-01 75.0% 48.2%
3475901 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 38.0 3.19e-01 70.8% 97.8%
3387119 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.55 38.0 3.23e-01 75.0% 44.4%
3959812 7059.1.1.0 a+b complex topology › SatS C-terminal domain › SatS C-terminal domain › SatS C-terminal domain 0.55 37.0 2.56e-01 72.9% 95.1%
4937915 4312.1.1.0 a+b two layers › RelE-like › RelE-like › RelE-like 0.55 42.0 3.44e-01 87.5% 66.7%
4975714 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.72e-01 75.0% 65.5%
4405079 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 38.0 3.15e-01 75.0% 42.1%
4163756 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 36.0 3.10e-01 72.9% 42.1%
3950312 7059.1.1.1 a+b complex topology › SatS C-terminal domain › SatS C-terminal domain › SatS C-terminal domain › PF31034 0.54 37.0 2.50e-01 72.9% 90.3%
4381868 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.54 38.0 3.21e-01 75.0% 45.6%
5032809 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.53 41.0 3.11e-01 85.4% 63.1%
3239567 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 35.0 2.81e-01 70.8% 36.2%
3267250 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 38.0 3.32e-01 75.0% 46.3%
3509551 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 35.0 3.00e-01 83.3% 42.4%
3500665 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 36.0 2.96e-01 83.3% 40.0%
3941388 319.1.1.1 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 36.0 2.62e-01 83.3% 26.6%