Back to structures

IMGVR_UViG_3300028298_000030-3300028298-Ga0268280_10007032

Arc-Vir

IMGVR_UViG_3300028298_000030-3300028298-Ga0268280_10007032

Quality

75.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-41
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.80 55.0 3.42e-01 75.6% 13.6%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.72 51.0 3.85e-01 80.5% 31.6%
2nq2D00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 50.0 3.07e-01 75.6% 13.3%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.72 53.0 3.62e-01 80.5% 22.8%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.71 50.0 4.54e-01 78.0% 52.6%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.71 53.0 4.01e-01 85.4% 56.6%
2qlvB02 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.70 48.0 4.94e-01 75.6% 78.9%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.70 48.0 3.19e-01 73.2% 39.3%
5cqgA02 3.10.10.20 Alpha Beta › Roll › HIV Type 1 Reverse Transcriptase; Chain A, domain 1 › 0.68 45.0 3.71e-01 78.0% 38.9%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.67 48.0 4.95e-01 80.5% 83.8%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.67 52.0 3.19e-01 90.2% 53.5%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 46.0 3.48e-01 75.6% 40.0%
4pkcC00 6.20.90.20 Special › Other non-globular › SH3 type barrels. › Benzylsuccinate synthase gamma subunit 0.65 47.0 4.76e-01 78.0% 90.2%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.65 50.0 3.09e-01 90.2% 71.3%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 52.0 3.54e-01 100.0% 41.3%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.64 45.0 3.17e-01 75.6% 44.8%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 42.0 2.80e-01 80.5% 15.9%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 42.0 3.32e-01 78.0% 29.0%
3bt7A02 2.40.50.1070 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 49.0 3.39e-01 87.8% 32.4%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.62 47.0 3.92e-01 85.4% 52.6%
2zihC00 1.10.3630.10 Mainly Alpha › Orthogonal Bundle › yeast vps74-n-term truncation variant fold › yeast vps74-n-term truncation variant domain like 0.62 46.0 2.84e-01 82.9% 19.4%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 51.0 3.50e-01 100.0% 77.2%
2w5yA01 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.62 44.0 2.98e-01 78.0% 32.9%
2v8qB00 6.20.250.60 Special › Other non-globular › Double Stranded RNA Binding Domain › 0.61 46.0 3.84e-01 82.9% 67.1%
5ksoA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 42.0 2.80e-01 87.8% 16.9%
2eshA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.18e-01 80.5% 28.1%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.60 41.0 3.04e-01 70.7% 24.8%
4uhvA02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.60 39.0 3.12e-01 75.6% 30.4%
3l7wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.22e-01 80.5% 30.5%
3aonA00 1.10.287.3240 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 40.0 2.64e-01 73.2% 14.9%
1tgjA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.58 42.0 3.15e-01 80.5% 45.5%
6zzmA01 3.30.559.10 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Chloramphenicol acetyltransferase-like domain 0.58 44.0 2.79e-01 87.8% 19.3%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 44.0 3.11e-01 92.7% 47.1%
3f1yA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 47.0 2.83e-01 97.6% 12.3%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 46.0 3.21e-01 95.1% 30.0%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 46.0 3.44e-01 95.1% 57.4%
4yg6B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.12e-01 100.0% 95.1%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 43.0 2.99e-01 90.2% 77.3%
1kqrA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.10e-01 100.0% 96.9%
1auiA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 42.0 2.54e-01 92.7% 58.2%
2xgtB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.09e-01 82.9% 80.2%
2x10A01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 39.0 2.75e-01 82.9% 21.6%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 40.0 2.76e-01 85.4% 80.1%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.53 40.0 3.46e-01 90.2% 70.1%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 40.0 2.84e-01 95.1% 38.7%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.17e-01 85.4% 90.3%
4bq6F00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.53 39.0 2.72e-01 80.5% 45.0%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.53 34.0 2.84e-01 73.2% 28.2%
4oo1I01 2.40.50.880 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.22e-01 80.5% 57.3%
1ldjA05 4.10.1030.10 Few Secondary Structures › Irregular › Ring Box Chain A; domain 5 › Ring Box Chain A; domain 5 0.53 36.0 3.03e-01 73.2% 100.0%
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.51 39.0 2.99e-01 85.4% 43.4%
3igmA00 1.20.5.2050 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.51 41.0 3.83e-01 92.7% 76.8%
4umgA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 2.80e-01 78.0% 52.0%
2v4jB03 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.20e-01 75.6% 49.2%
3obaA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.51 37.0 2.31e-01 87.8% 93.9%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.85e-01 90.2% 74.7%
2b0aA00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.50 37.0 2.55e-01 90.2% 63.4%
1i5eA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 34.0 2.30e-01 73.2% 52.4%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3940405 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.80 63.0 4.03e-01 85.4% 18.9%
3405466 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 59.0 3.84e-01 80.5% 19.4%
3349668 208.1.1.5 beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › UDPGP 0.75 51.0 3.36e-01 73.2% 16.7%
312608 2004.1.1.417 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran, AAA_21 0.72 50.0 3.07e-01 75.6% 13.3%
3038102 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.70 45.0 4.11e-01 70.7% 48.2%
3888254 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 4.73e-01 75.6% 66.7%
4878665 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.69 47.0 3.15e-01 73.2% 20.1%
5001130 101.1.2.44 alpha arrays › HTH › HTH › winged helix domain › Ribosomal_S25 0.69 49.0 3.81e-01 85.4% 33.0%
3504218 377.1.1.10 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ArfGap 0.68 50.0 2.92e-01 82.9% 29.0%
4203291 3256.1.1.2 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain › eIF3g 0.66 50.0 5.29e-01 80.5% 88.6%
4924547 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 47.0 4.07e-01 75.6% 69.2%
3892942 391.1.2.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.65 42.0 4.01e-01 73.2% 54.0%
4024146 361.1.1.1 few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ_CXXCXGXG 0.65 52.0 4.89e-01 92.7% 72.0%
3181098 223.1.1.94 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS-like 0.64 44.0 3.43e-01 82.9% 31.6%
3813009 207.1.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1 0.63 48.0 2.79e-01 82.9% 53.3%
4032979 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.63 47.0 3.45e-01 82.9% 89.1%
3727070 206.1.1.15 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Fructosamin_kin 0.62 44.0 2.74e-01 85.4% 12.3%
3411686 3136.1.1.1 extended segments › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Gle2-binding sequence (GLEBS) of Nup98 › Nup98_GLEBS 0.62 42.0 3.80e-01 70.7% 50.0%
5027694 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.62 42.0 3.92e-01 75.6% 51.9%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 44.0 3.80e-01 70.7% 44.6%
3942150 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.61 51.0 4.04e-01 97.6% 67.8%
4975329 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.61 47.0 3.16e-01 87.8% 21.7%
5031928 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.61 40.0 3.67e-01 82.9% 47.3%
3476815 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.61 41.0 3.62e-01 73.2% 44.3%
3740323 101.1.9.6 alpha arrays › HTH › HTH › Putative DNA-binding domain › KilA-N 0.60 41.0 3.06e-01 70.7% 25.2%
4964750 604.2.1.1 alpha bundles › Spectrin repeat-like › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain › Succ_DH_flav_C 0.60 48.0 3.38e-01 97.6% 32.0%
4009814 252.2.1.5 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.59 45.0 3.99e-01 87.8% 55.4%
3958077 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 39.0 2.69e-01 70.7% 16.4%
3211024 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.59 43.0 3.26e-01 80.5% 38.1%
3482663 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.59 40.0 3.53e-01 73.2% 44.3%
None 0.59 47.0 2.89e-01 97.6% 81.1%
4121218 387.1.1.24 few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › Toxin_35 0.58 43.0 3.98e-01 80.5% 60.0%
4004145 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 45.0 2.85e-01 87.8% 17.7%
3221418 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.57 42.0 2.53e-01 82.9% 30.7%
3472428 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.57 39.0 3.37e-01 78.0% 41.2%
4089558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 2.99e-01 95.1% 70.3%
3405942 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.56 38.0 3.28e-01 73.2% 38.7%
3412178 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.55 39.0 3.47e-01 78.0% 47.8%
2141376 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.55 40.0 3.36e-01 75.6% 40.8%
3389451 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.55 40.0 3.38e-01 75.6% 41.3%
3690527 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 38.0 2.98e-01 78.0% 31.6%
3598708 361.1.1.0 few secondary structure elements › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain › DnaJ/Hsp40 cysteine-rich domain 0.54 46.0 3.92e-01 100.0% 58.6%
3483269 4184.1.1.0 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 39.0 3.42e-01 78.0% 47.1%
3403820 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.53 40.0 3.42e-01 82.9% 71.4%
3414782 5001.1.1.1 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.53 36.0 2.14e-01 78.0% 8.3%
3389450 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.52 37.0 3.31e-01 78.0% 47.1%
3793482 7036.1.1.1 beta barrels › N-terminal domain of TAP-binding protein-related › N-terminal domain of TAP-binding protein-related › N-terminal domain of TAP-binding protein-related › I-set 0.52 37.0 2.75e-01 80.5% 44.0%
3574976 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.52 37.0 3.53e-01 82.9% 60.0%
4797400 220.3.1.5 beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Rhabdo_glycop_FD, PH_Rhabdo_glycop 0.51 34.0 3.30e-01 90.2% 54.2%
3484326 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.51 44.0 2.64e-01 100.0% 93.3%
3792928 11.1.1.97 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › I-set 0.51 34.0 3.42e-01 85.4% 67.5%
3415052 4184.1.1.1 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.51 41.0 3.47e-01 90.2% 75.7%
11423 2487.1.1.9 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › Cyclase 0.50 37.0 2.55e-01 90.2% 63.4%
4928781 2004.1.1.156 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_5 0.50 37.0 2.32e-01 100.0% 17.8%