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IMGVR_UViG_3300028326_000299-3300028326-Ga0268263_1000016142
Arc-VirIMGVR_UViG_3300028326_000299-3300028326-Ga0268263_1000016142
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 12-69
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1urfA00 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.76 | 64.0 | 5.72e-01 | 93.1% | 76.5% |
D2
medium
residues 70-142
Domain cluster:
rep: JBCH_GD18_4_SO25_S179_scaffold_97345_prodigal-single.1__X__X__00007__D49-121
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7kfuC02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.54 | 40.0 | 2.84e-01 | 79.5% | 45.5% |
| 1hp7A01 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.53 | 32.0 | 2.99e-01 | 78.1% | 45.3% |
| 5inwA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.52 | 31.0 | 2.83e-01 | 76.7% | 39.8% |
| 2fyuI00 | 2.10.210.10 | Mainly Beta › Ribbon › Cytochrome Bc1 Complex; Chain I › Cytochrome Bc1 Complex; Chain I | 0.52 | 29.0 | 3.20e-01 | 72.6% | 66.7% |
| 3flkA00 | 3.40.718.10 | Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase | 0.52 | 42.0 | 2.80e-01 | 94.5% | 56.3% |
| 1rsgA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 40.0 | 2.87e-01 | 90.4% | 96.3% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1224463 | 305.1.1.1 ↗ | a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L | 0.65 | 41.0 | 4.70e-01 | 91.8% | 95.9% |
| 3700547 | 109.4.1.22 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Adaptin_N | 0.57 | 44.0 | 2.57e-01 | 83.6% | 33.0% |
| 3269258 | 2006.1.6.12 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA_2 | 0.56 | 40.0 | 2.77e-01 | 83.6% | 23.1% |
| 3428671 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.55 | 32.0 | 3.34e-01 | 86.3% | 58.6% |
| 3250373 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.54 | 46.0 | 3.05e-01 | 97.3% | 76.1% |
| 3210377 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.53 | 44.0 | 3.17e-01 | 98.6% | 60.8% |
| 3274271 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.52 | 38.0 | 2.60e-01 | 100.0% | 20.7% |
| 3950089 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.52 | 40.0 | 2.73e-01 | 87.7% | 54.1% |
| 4882106 | 225.1.1.3 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c | 0.51 | 38.0 | 3.52e-01 | 83.6% | 69.7% |