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IMGVR_UViG_3300028326_000299-3300028326-Ga0268263_1000016162

Arc-Vir

IMGVR_UViG_3300028326_000299-3300028326-Ga0268263_1000016162

Quality

76.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-78
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yg2A02 6.10.140.190 Special › Helix non-globular › Helix Hairpins › 0.81 59.0 5.62e-01 75.6% 91.1%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.81 65.0 5.96e-01 87.2% 81.4%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.78 68.0 6.67e-01 94.9% 95.2%
2d9dA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.78 67.0 6.42e-01 94.9% 86.5%
1lvfB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.77 66.0 5.99e-01 93.6% 96.2%
4it4A02 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.77 65.0 6.22e-01 92.3% 83.5%
1pn9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.76 60.0 5.05e-01 84.6% 57.7%
1sumB02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.76 65.0 5.61e-01 93.6% 91.5%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.74 66.0 6.06e-01 97.4% 82.8%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 53.0 5.76e-01 87.2% 93.7%
2ra1A01 1.20.58.790 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.74 61.0 5.72e-01 92.3% 93.9%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.73 64.0 5.17e-01 96.2% 84.1%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 47.0 5.30e-01 94.9% 88.1%
1quuA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 61.0 5.19e-01 92.3% 76.2%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.72 58.0 5.87e-01 92.3% 90.9%
4akgA04 1.20.58.1120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Dynein motor heavy chain, linker domain, subdomain 4 0.71 65.0 5.11e-01 100.0% 62.2%
2i0mA01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.71 58.0 5.31e-01 91.0% 82.1%
4lixA03 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.71 57.0 4.04e-01 100.0% 28.8%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.70 62.0 6.03e-01 100.0% 98.8%
3eslA01 1.20.58.2070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 53.0 5.45e-01 92.3% 86.7%
3wd6A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 55.0 4.84e-01 88.5% 66.1%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.68 56.0 4.98e-01 91.0% 66.7%
3ag7A00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.67 52.0 4.68e-01 94.9% 61.0%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 55.0 5.09e-01 94.9% 87.6%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.66 53.0 5.33e-01 94.9% 87.3%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.65 39.0 4.57e-01 82.1% 90.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.45e-01 80.8% 69.9%
1hp8A00 1.10.287.1130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › CytochromE C oxidase copper chaperone 0.63 46.0 4.89e-01 89.7% 89.7%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.63 53.0 4.24e-01 88.5% 56.8%
7k3zG01 3.50.7.10 Alpha Beta › 3-Layer(bba) Sandwich › GroEL › GroEL 0.63 55.0 4.03e-01 97.4% 58.7%
1wkbA03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.62 52.0 4.64e-01 98.7% 66.1%
4lunU00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 53.0 3.57e-01 96.2% 58.5%
5dqqA01 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.61 51.0 4.50e-01 98.7% 76.6%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 43.0 3.68e-01 75.6% 80.5%
1o4wA00 3.40.50.1010 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease 0.60 46.0 3.94e-01 85.9% 51.2%
4l8iB00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.60 52.0 4.65e-01 98.7% 86.6%
4gytA00 1.20.120.740 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YgfB uncharacterised protein family PF03695 0.59 46.0 3.56e-01 97.4% 37.3%
4rajA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.58 46.0 3.52e-01 92.3% 65.7%
3bemB00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.57 41.0 3.07e-01 75.6% 86.6%
2aj4B03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.57 48.0 3.90e-01 97.4% 82.7%
4xr9B02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 46.0 3.32e-01 87.2% 45.9%
3ajfA00 1.20.1440.190 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein 0.56 44.0 4.23e-01 89.7% 79.3%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 47.0 4.27e-01 97.4% 92.7%
4ex8A00 3.40.1790.10 Alpha Beta › 3-Layer(aba) Sandwich › Indigoidine synthase fold › Indigoidine synthase domain 0.53 44.0 3.05e-01 96.2% 45.2%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 39.0 2.89e-01 79.5% 87.9%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.50 41.0 3.20e-01 91.0% 93.3%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4327633 4336.1.1.1 alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF 0.88 57.0 4.98e-01 71.8% 47.3%
3252672 604.6.1.2 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › ANTH 0.86 75.0 6.25e-01 92.3% 72.0%
5046472 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.85 73.0 6.82e-01 92.3% 88.4%
3256821 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.84 72.0 6.19e-01 93.6% 70.0%
5070891 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.83 67.0 6.63e-01 89.7% 82.5%
3528346 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.82 70.0 5.42e-01 92.3% 60.6%
4236831 604.6.1.50 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF2524 0.82 73.0 7.24e-01 94.9% 95.0%
3784566 604.1.1.191 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF29057 0.82 69.0 6.32e-01 91.0% 90.0%
3713159 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.81 69.0 5.89e-01 92.3% 82.5%
3224585 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.80 68.0 6.03e-01 92.3% 80.0%
3530149 6171.1.1.1 alpha bundles › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › C-terminal helical domain in Jumonji domain-containing histone demethylases › JHD 0.79 67.0 5.86e-01 92.3% 73.0%
3213117 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.79 59.0 5.47e-01 78.2% 81.1%
3339727 632.22.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats 0.78 57.0 5.37e-01 85.9% 63.2%
4991399 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.78 66.0 6.47e-01 92.3% 96.5%
4998039 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.78 69.0 6.35e-01 97.4% 87.0%
3596375 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 65.0 5.56e-01 92.3% 86.4%
3533309 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.77 65.0 5.90e-01 92.3% 82.9%
5083776 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.77 71.0 6.61e-01 98.7% 84.2%
3927006 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.76 63.0 6.04e-01 91.0% 96.7%
3786136 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.76 63.0 5.58e-01 92.3% 75.7%
3907206 603.1.1.124 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE, V-SNARE_C 0.76 64.0 4.84e-01 92.3% 48.3%
3919843 604.1.1.124 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_6 0.75 65.0 5.47e-01 94.9% 84.6%
3824114 604.6.1.24 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › DUF6857 0.75 64.0 5.43e-01 94.9% 91.5%
3476130 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.74 61.0 5.07e-01 91.0% 62.9%
4024628 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 57.0 6.03e-01 83.3% 91.4%
5048041 610.2.1.0 alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 0.74 63.0 5.87e-01 92.3% 75.8%
3593138 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.73 66.0 4.29e-01 100.0% 37.3%
3398541 109.4.1.1492 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_SCC3-SA, PF31007 0.72 62.0 3.84e-01 94.9% 29.1%
3518321 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.72 61.0 5.36e-01 93.6% 85.2%
3638026 109.4.1.2274 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF7100 0.72 63.0 4.18e-01 100.0% 54.6%
3498656 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.72 60.0 5.77e-01 93.6% 97.8%
55069 603.1.1.1 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.72 64.0 5.74e-01 100.0% 93.6%
1685299 6110.1.1.0 alpha superhelices › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain › Linker domain of cytoplasmic dynein heavy chain 0.71 64.0 4.70e-01 100.0% 46.4%
3595289 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.70 56.0 5.25e-01 94.9% 71.6%
4402843 604.1.1.20 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › AKNA 0.69 59.0 5.21e-01 94.9% 87.8%
3164182 109.4.1.216 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SLT_L 0.68 62.0 3.93e-01 100.0% 20.5%
3505507 1134.1.1.0 alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.67 51.0 5.36e-01 85.9% 94.3%
3375952 6155.1.1.1 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv 0.67 54.0 4.44e-01 91.0% 69.3%
3602825 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.66 60.0 5.02e-01 98.7% 70.8%
5063374 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.66 46.0 3.87e-01 71.8% 43.7%
3765900 109.4.1.470 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › INTS2 0.66 59.0 5.04e-01 100.0% 94.4%
4662540 633.31.1.0 alpha bundles › Bromodomain-like › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase › Four-helical bundle insertion domain in pyruvate-ferredoxin oxidoreductase 0.66 48.0 4.97e-01 85.9% 81.3%
3931480 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.65 50.0 4.84e-01 85.9% 80.0%
3496514 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.64 56.0 3.31e-01 100.0% 16.4%
4076334 109.4.1.681 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.63 56.0 4.30e-01 100.0% 90.0%
3405088 109.4.1.903 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_28 0.63 54.0 3.84e-01 98.7% 47.8%
5077106 3861.1.1.0 alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) 0.61 51.0 4.53e-01 100.0% 63.2%
3679557 611.3.1.1 alpha bundles › N-cbl like › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 › Med26 0.61 52.0 5.07e-01 93.6% 87.1%
3290203 604.7.1.0 alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A 0.59 49.0 4.54e-01 94.9% 96.2%
3724384 109.4.1.583 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi 0.57 50.0 3.51e-01 98.7% 56.8%
3612725 650.1.1.1 alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › DnaJ 0.57 50.0 4.92e-01 100.0% 100.0%
4365789 632.7.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.55 48.0 4.59e-01 93.6% 83.3%
3938634 2484.1.1.50 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Dimer_Tnp_hAT 0.55 43.0 2.75e-01 98.7% 15.9%
4025289 192.29.1.197 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › DUF4110 0.52 39.0 3.80e-01 80.8% 72.9%