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IMGVR_UViG_3300028326_000299-3300028326-Ga0268263_1000016164

Arc-Vir

IMGVR_UViG_3300028326_000299-3300028326-Ga0268263_1000016164

Quality

92.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-78
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 46.0 3.41e-01 92.2% 26.4%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.70 49.0 3.47e-01 72.7% 36.9%
1wrjA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.69 46.0 4.88e-01 100.0% 79.1%
5wceA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 47.0 4.06e-01 75.3% 73.9%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.66 48.0 4.11e-01 76.6% 75.6%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 45.0 3.19e-01 71.4% 39.9%
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.64 48.0 4.95e-01 85.7% 83.8%
5aguA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 46.0 3.94e-01 76.6% 78.6%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 46.0 3.39e-01 76.6% 48.2%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 52.0 4.40e-01 88.3% 73.2%
1sazA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 47.0 3.62e-01 83.1% 82.4%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 49.0 4.20e-01 88.3% 71.0%
7x3hA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 39.0 3.44e-01 70.1% 99.1%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.58 41.0 3.64e-01 74.0% 76.6%
1fwxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 43.0 2.65e-01 79.2% 76.0%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 49.0 4.02e-01 93.5% 72.3%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 46.0 3.65e-01 88.3% 59.6%
1npeA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 50.0 3.50e-01 100.0% 96.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 48.0 4.19e-01 90.9% 74.3%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.57 47.0 4.17e-01 90.9% 74.3%
1huxA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 38.0 3.17e-01 70.1% 100.0%
3df7A02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.55 48.0 4.03e-01 100.0% 74.5%
4mdaA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 48.0 3.62e-01 100.0% 59.5%
8gtyA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.54 47.0 3.63e-01 97.4% 89.0%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 38.0 3.35e-01 94.8% 50.9%
3hi0A02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.53 46.0 3.50e-01 96.1% 85.8%
1eo1A00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.52 44.0 3.73e-01 90.9% 87.9%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 47.0 3.47e-01 100.0% 52.8%
1t6cA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.52 45.0 3.46e-01 97.4% 91.2%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.52 44.0 3.96e-01 98.7% 76.3%
2ivnA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 44.0 3.49e-01 97.4% 94.6%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 46.0 3.36e-01 100.0% 46.3%
5eoxB03 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 43.0 3.61e-01 90.9% 96.9%
3nuwA01 3.30.420.300 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, substrate binding domain 0.51 38.0 3.68e-01 100.0% 70.0%
8oqkA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 42.0 3.84e-01 89.6% 97.1%
4fzxC00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 41.0 3.35e-01 94.8% 80.0%
3mdqA02 3.30.420.150 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 0.51 45.0 3.38e-01 98.7% 91.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4949754 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.73 44.0 4.96e-01 98.7% 78.3%
4981069 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.72 47.0 5.07e-01 100.0% 78.5%
4287244 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.72 50.0 4.24e-01 71.4% 78.3%
3386602 2484.2.1.1 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.72 47.0 5.08e-01 100.0% 80.0%
3911642 2484.2.1.1 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain › Methyltransf_1N 0.72 57.0 5.42e-01 100.0% 73.3%
4606763 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.68 47.0 4.06e-01 72.7% 72.5%
5037858 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.68 48.0 5.04e-01 100.0% 81.4%
3387590 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.66 48.0 4.19e-01 76.6% 74.8%
2392831 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.63 44.0 3.75e-01 72.7% 75.6%
4360456 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.63 48.0 4.02e-01 81.8% 70.0%
3743202 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.62 45.0 3.88e-01 76.6% 81.7%
3728061 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.61 50.0 4.19e-01 89.6% 80.5%
4619259 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.59 48.0 3.91e-01 89.6% 74.5%
3624709 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.59 46.0 3.90e-01 85.7% 76.9%
3932752 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.59 48.0 4.10e-01 89.6% 80.0%
2325189 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.58 46.0 3.82e-01 85.7% 72.3%
4129628 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 49.0 3.80e-01 93.5% 90.9%
3407531 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.58 47.0 3.95e-01 89.6% 77.0%
3230926 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.58 47.0 3.96e-01 89.6% 79.2%
3501432 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 50.0 4.46e-01 98.7% 92.7%
3945792 3953.1.1.2 a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N2 0.57 33.0 2.98e-01 96.1% 40.0%
4410634 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.57 48.0 3.65e-01 94.8% 88.9%
3840837 5.1.3.2 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b 0.57 49.0 3.40e-01 100.0% 88.8%
4027851 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.57 48.0 3.94e-01 94.8% 78.6%
4965819 5.1.4.667 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_HVO_0234 0.56 50.0 3.46e-01 100.0% 94.7%
5011985 2484.2.1.0 mixed a+b and a/b › Ribonuclease H-like › Methylated DNA-protein cysteine methyltransferase domain › Methylated DNA-protein cysteine methyltransferase domain 0.56 44.0 4.66e-01 98.7% 92.9%
4990645 2484.1.1.139 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF429 0.55 43.0 3.33e-01 83.1% 98.2%
5036237 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.55 46.0 3.99e-01 89.6% 91.3%
4264624 2484.1.1.12 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.54 48.0 3.11e-01 100.0% 54.6%
4960397 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.54 44.0 3.78e-01 88.3% 88.3%
4600904 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 46.0 3.55e-01 97.4% 87.2%
5022129 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.53 46.0 3.81e-01 94.8% 97.8%
5012399 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.53 46.0 3.93e-01 94.8% 94.2%
4481004 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 44.0 3.45e-01 90.9% 96.9%
5042784 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 42.0 3.66e-01 88.3% 88.3%
5054600 2484.1.1.10 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TsaD 0.52 45.0 3.96e-01 97.4% 89.6%
4995744 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.52 46.0 3.89e-01 96.1% 70.7%
4938348 2484.1.1.25 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.52 44.0 3.40e-01 90.9% 89.7%
4190719 2484.1.1.8 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ROK 0.52 43.0 3.62e-01 92.2% 93.3%
5022939 2484.1.1.23 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydantoinase_A 0.52 46.0 3.94e-01 96.1% 94.2%
4962902 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.52 45.0 4.11e-01 96.1% 90.0%
3602109 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.52 46.0 3.27e-01 100.0% 39.5%
5052226 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.52 45.0 3.99e-01 94.8% 93.6%
5077631 2484.1.1.340 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Volactin 0.51 43.0 3.47e-01 93.5% 96.8%
5068447 2484.1.1.38 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › eRF1_2 0.51 42.0 3.58e-01 90.9% 94.6%
5009752 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.51 44.0 3.72e-01 100.0% 90.0%
5067321 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 43.0 4.12e-01 90.9% 94.4%
3800825 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 43.0 3.46e-01 97.4% 94.7%
4980468 2484.1.1.338 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › baeRF_family10 0.51 46.0 3.86e-01 100.0% 84.6%
4293728 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 45.0 3.80e-01 96.1% 92.8%
4989574 2484.1.1.21 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › BcrAD_BadFG 0.51 46.0 3.21e-01 100.0% 40.0%
4141802 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 45.0 3.84e-01 96.1% 95.8%
4935360 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.51 45.0 3.74e-01 96.1% 96.9%
4654430 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.51 44.0 3.68e-01 96.1% 85.9%
4933350 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 41.0 3.49e-01 88.3% 88.3%
4976249 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 41.0 3.62e-01 88.3% 96.5%
4957854 2484.4.1.1 mixed a+b and a/b › Ribonuclease H-like › Nitrogenase accessory factor-like › Nitrogenase accessory factor-like › Nitro_FeMo-Co 0.51 45.0 3.90e-01 96.1% 95.7%
5026836 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 35.0 3.63e-01 98.7% 78.6%
4995978 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 39.0 3.34e-01 98.7% 49.6%
3592277 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.50 42.0 3.24e-01 94.8% 73.0%