←Back to structures

IMGVR_UViG_3300028346_000061-3300028346-Ga0306876_1016791

Arc-Vir

IMGVR_UViG_3300028346_000061-3300028346-Ga0306876_1016791

Identity

Kingdom:
archaea

Quality

71.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 54-145
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.69 57.0 5.21e-01 90.2% 83.9%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 48.0 4.32e-01 88.0% 56.0%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.65 45.0 3.16e-01 71.7% 44.8%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 53.0 3.58e-01 87.0% 42.6%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 53.0 3.66e-01 88.0% 59.0%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 51.0 3.47e-01 88.0% 48.3%
2gfoA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 49.0 3.33e-01 87.0% 52.5%
6jt6A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.61 51.0 4.02e-01 92.4% 75.4%
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.61 45.0 4.01e-01 80.4% 74.6%
4qi3A00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.60 50.0 3.90e-01 92.4% 72.9%
1e69A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 3.36e-01 83.7% 61.6%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 48.0 3.75e-01 90.2% 81.9%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.59 42.0 4.33e-01 77.2% 78.4%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 48.0 3.77e-01 91.3% 78.9%
4eqvA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.58 47.0 3.82e-01 88.0% 86.4%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 46.0 3.77e-01 90.2% 84.7%
3mepA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 45.0 3.70e-01 90.2% 84.4%
2i2lB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 37.0 4.12e-01 84.8% 94.1%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.55 41.0 3.71e-01 80.4% 80.9%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 29.0 3.67e-01 73.9% 100.0%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.54 37.0 3.30e-01 72.8% 74.5%
7jooC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.91e-01 81.5% 74.2%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.78e-01 81.5% 61.3%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.52 36.0 2.87e-01 71.7% 54.4%
4zk3A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.52 39.0 3.53e-01 80.4% 84.3%
1wz9A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 39.0 3.40e-01 81.5% 83.1%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 45.0 3.57e-01 96.7% 87.2%
1ekgA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.51 37.0 3.43e-01 76.1% 83.2%
2g16B00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.51 38.0 3.23e-01 80.4% 73.6%
2in5A00 2.40.360.10 Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like 0.50 36.0 2.94e-01 77.2% 69.2%
2dd7A00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.50 38.0 2.93e-01 80.4% 55.1%
1b63A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 41.0 3.14e-01 89.1% 57.9%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.50 37.0 3.58e-01 79.3% 90.6%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 39.0 3.59e-01 85.9% 83.9%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3978624 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.67 48.0 4.28e-01 88.0% 53.1%
2095 4976.1.1.1 ↗ beta sandwiches › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › C-terminal domain in YerB-like proteins › DUF3048_C 0.66 45.0 4.04e-01 71.7% 100.0%
5012403 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 53.0 4.42e-01 90.2% 83.0%
3394711 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.64 48.0 4.00e-01 79.3% 68.1%
3256023 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.63 47.0 4.21e-01 80.4% 82.2%
3999575 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.62 46.0 4.11e-01 80.4% 77.0%
3536447 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.61 45.0 3.98e-01 80.4% 75.9%
3985863 219.1.1.109 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Toxin_15 0.61 48.0 3.74e-01 85.9% 55.1%
3413140 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.60 47.0 3.76e-01 84.8% 88.4%
4496880 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.59 47.0 3.81e-01 87.0% 79.9%
4179501 292.2.1.4 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_2 0.59 41.0 3.83e-01 72.8% 89.2%
3931993 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 36.0 4.33e-01 76.1% 95.0%
5025094 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.59 45.0 4.26e-01 83.7% 100.0%
2831843 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.10e-01 91.3% 66.3%
3596180 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 44.0 4.25e-01 79.3% 100.0%
3533318 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 30.0 3.96e-01 75.0% 94.0%
3433070 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 36.0 4.04e-01 71.7% 84.1%
3952459 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 47.0 3.94e-01 91.3% 81.2%
4113536 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.57 42.0 3.62e-01 80.4% 90.6%
3794738 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 45.0 3.64e-01 88.0% 73.3%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.57 44.0 4.34e-01 83.7% 100.0%
4113246 220.1.1.153 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 0.57 41.0 3.57e-01 73.9% 68.9%
3719928 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 46.0 3.75e-01 89.1% 96.1%
3933078 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 43.0 2.55e-01 80.4% 33.0%
3267345 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.57 33.0 4.09e-01 82.6% 96.4%
3788176 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.57 44.0 3.35e-01 83.7% 96.4%
3261967 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.56 38.0 2.91e-01 70.7% 75.6%
5033737 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.56 42.0 3.41e-01 81.5% 89.4%
3994238 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 3.73e-01 70.7% 90.0%
3876094 10.1.1.77 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1, Laminin_G_2 0.55 46.0 3.08e-01 94.6% 34.8%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.55 31.0 3.86e-01 72.8% 100.0%
4955729 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 45.0 3.72e-01 90.2% 81.2%
3936037 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 38.0 3.86e-01 70.7% 90.0%
3821920 4.1.1.283 ↗ beta barrels › SH3 › SH3 › SH3 › KOW6_SPT51-2 0.55 33.0 4.04e-01 71.7% 100.0%
3716707 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 44.0 3.58e-01 88.0% 85.6%
3393297 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 37.0 3.97e-01 85.9% 81.2%
3997948 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 44.0 3.74e-01 89.1% 96.1%
3698121 5.1.4.52 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sortilin-Vps10 0.54 41.0 2.33e-01 81.5% 17.7%
3791851 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 37.0 3.22e-01 71.7% 81.4%
4218142 4.1.1.101 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_2 0.53 35.0 3.48e-01 73.9% 63.0%
4126006 325.1.7.14 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid 0.53 31.0 3.62e-01 78.3% 83.1%
3755227 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 45.0 3.56e-01 94.6% 75.4%
3802876 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 40.0 2.73e-01 79.3% 55.2%
3630412 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 39.0 2.66e-01 80.4% 90.6%
3712219 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.52 35.0 3.93e-01 90.2% 98.5%
3240511 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.51 40.0 3.87e-01 85.9% 98.1%
4404190 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.51 42.0 3.16e-01 89.1% 55.6%
1906032 241.2.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like › Frataxin_Cyay 0.51 38.0 3.17e-01 79.3% 59.2%
3595333 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 41.0 3.18e-01 89.1% 62.9%
4233929 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.51 42.0 3.14e-01 89.1% 55.6%
3716539 225.1.1.7 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c_3 0.50 41.0 3.06e-01 89.1% 60.0%