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IMGVR_UViG_3300028349_000009-3300028349-Ga0306915_1006041
Arc-VirIMGVR_UViG_3300028349_000009-3300028349-Ga0306915_1006041
Identity
- Kingdom:
- archaea
Quality
65.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 475-566
D2
medium
residues 49-162_322-369
Domain cluster:
rep: OR354825.1__WNM51604.1__CoNPh2_CDS0050__00048__D273-380_559-584
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10145.15 best | PhageMin_Tail | 37.5 | 3.30e-09 | 80.2% | 53.7% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2c5uA02 | 1.10.3550.20 | Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › | 0.54 | 26.0 | 2.86e-01 | 91.4% | 55.0% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 38.0 | 3.19e-01 | 72.2% | 95.1% |
| 6rv2A00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 28.0 | 2.45e-01 | 82.7% | 34.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4032310 | 159.1.2.6 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail | 0.93 | 76.0 | 7.89e-01 | 83.3% | 100.0% |
| 3980709 | 103.4.1.27 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TMP_2 | 0.75 | 54.0 | 5.45e-01 | 72.8% | 100.0% |
| 4986459 | 159.1.2.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related | 0.60 | 43.0 | 4.44e-01 | 72.8% | 81.3% |
| 3932767 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.55 | 34.0 | 3.00e-01 | 100.0% | 40.4% |
| 4286470 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.52 | 41.0 | 3.76e-01 | 80.9% | 67.8% |
| 4341977 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.52 | 40.0 | 3.57e-01 | 81.5% | 59.1% |
| 4306505 | 5067.1.1.2 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › SecD_SecF | 0.51 | 39.0 | 3.63e-01 | 81.5% | 66.7% |
D3
medium
residues 163-215_243-265_304-321
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2zycA01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.61 | 46.0 | 4.49e-01 | 81.9% | 94.3% |
| 3kzqA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 41.0 | 3.23e-01 | 100.0% | 32.0% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.60 | 45.0 | 4.76e-01 | 91.5% | 92.6% |
| 1c9bA02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 44.0 | 4.25e-01 | 78.7% | 73.6% |
| 3k1zA02 | 1.10.150.720 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase | 0.55 | 44.0 | 4.68e-01 | 91.5% | 96.4% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.54 | 43.0 | 3.64e-01 | 85.1% | 92.3% |
| 1w98B02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 41.0 | 3.86e-01 | 79.8% | 71.1% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.53 | 36.0 | 3.95e-01 | 95.7% | 86.7% |
| 1ne2B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 37.0 | 2.99e-01 | 72.3% | 94.0% |
| 2pejA00 | 1.10.1200.210 | Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Chaperonin-like RbcX | 0.52 | 31.0 | 3.00e-01 | 91.5% | 49.5% |
| 3deeA01 | 1.10.150.690 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DUF2063 | 0.51 | 35.0 | 3.61e-01 | 90.4% | 77.9% |
| 1rrmA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 38.0 | 3.00e-01 | 79.8% | 96.5% |
| 2ogiB00 | 1.10.3210.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 | 0.50 | 38.0 | 3.02e-01 | 80.9% | 55.4% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4982319 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.68 | 42.0 | 3.18e-01 | 91.5% | 26.5% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.61 | 46.0 | 4.45e-01 | 78.7% | 88.6% |
| 3389110 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.59 | 44.0 | 4.09e-01 | 77.7% | 91.3% |
| 3352321 | 101.1.10.3 ↗ | alpha arrays › HTH › HTH › Cyclin-like › TFIIB | 0.58 | 44.0 | 4.21e-01 | 79.8% | 73.6% |
| 3586873 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 37.0 | 3.68e-01 | 91.5% | 62.0% |
| 3436562 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.55 | 32.0 | 3.52e-01 | 86.2% | 70.7% |
| 3740436 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.55 | 42.0 | 3.83e-01 | 79.8% | 64.2% |
| 3582614 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.55 | 41.0 | 3.62e-01 | 79.8% | 57.9% |
| 5000181 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.55 | 41.0 | 3.89e-01 | 78.7% | 71.8% |
| 3600574 | 101.1.10.1 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N | 0.55 | 44.0 | 3.70e-01 | 88.3% | 83.0% |
| 3720948 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.54 | 33.0 | 3.51e-01 | 84.0% | 69.6% |
| 3423711 | 101.1.10.7 ↗ | alpha arrays › HTH › HTH › Cyclin-like › Cyclin_C | 0.53 | 41.0 | 3.87e-01 | 79.8% | 74.5% |
D4
medium
residues 216-242_266-303
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ltlA01 | 3.30.1640.10 | Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 | 0.60 | 47.0 | 4.22e-01 | 84.6% | 76.7% |
| 1su0B00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.59 | 50.0 | 4.03e-01 | 98.5% | 83.1% |
| 3k1rA01 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.58 | 43.0 | 4.07e-01 | 80.0% | 65.4% |
| 1kmiZ02 | 1.10.287.500 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.57 | 36.0 | 2.85e-01 | 89.2% | 30.6% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 36.0 | 3.47e-01 | 92.3% | 57.3% |
| 3pvuA02 | 1.10.167.10 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 | 0.54 | 36.0 | 3.46e-01 | 100.0% | 57.5% |
| 1u3dA02 | 1.25.40.80 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.53 | 42.0 | 3.44e-01 | 92.3% | 54.5% |
| 2ic6A00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 36.0 | 3.51e-01 | 92.3% | 64.8% |
| 6ynwH01 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.52 | 35.0 | 3.43e-01 | 83.1% | 62.2% |
| 1k87A02 | 1.10.2060.10 | Mainly Alpha › Orthogonal Bundle › PutA proline dehydrogenase (PRODH), domain 2 › PutA proline dehydrogenase (PRODH), domain 2 | 0.51 | 38.0 | 3.36e-01 | 84.6% | 89.9% |
| 1y4cA03 | 1.20.120.660 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain | 0.51 | 35.0 | 2.99e-01 | 72.3% | 87.6% |
| 2cqnA00 | 1.10.10.440 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain | 0.51 | 36.0 | 3.52e-01 | 86.2% | 66.2% |
| 4iggA01 | 1.10.287.160 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat | 0.51 | 35.0 | 3.52e-01 | 92.3% | 70.1% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3712893 | 605.1.1.307 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › CEP76_N | 0.65 | 44.0 | 4.48e-01 | 70.8% | 93.8% |
| 3379162 | 148.1.3.227 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF7750 | 0.62 | 46.0 | 4.59e-01 | 89.2% | 77.1% |
| 3943810 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.59 | 45.0 | 4.51e-01 | 81.5% | 100.0% |
| 3233029 | 3711.1.1.24 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein › DUF4473 | 0.55 | 43.0 | 4.01e-01 | 86.2% | 81.2% |
| 3451862 | 10.13.1.0 ↗ | beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A | 0.55 | 37.0 | 2.63e-01 | 70.8% | 26.2% |
| 3729440 | 129.1.1.11 ↗ | alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › ApbA_C | 0.53 | 43.0 | 3.34e-01 | 92.3% | 56.7% |
| 3907634 | 101.1.2.518 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DNAJC9 | 0.52 | 35.0 | 3.32e-01 | 78.5% | 58.7% |
| 5055860 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 43.0 | 3.23e-01 | 100.0% | 65.1% |
| 5034052 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.51 | 36.0 | 3.59e-01 | 96.9% | 71.4% |
| 5026211 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 42.0 | 3.21e-01 | 100.0% | 68.0% |
| 4105031 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.50 | 38.0 | 2.80e-01 | 86.2% | 88.0% |