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IMGVR_UViG_3300028349_000103-3300028349-Ga0306915_1013679
Arc-VirIMGVR_UViG_3300028349_000103-3300028349-Ga0306915_1013679
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-56
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26227.1 best | DUF8053 | 85.9 | 2.50e-24 | 100.0% | 91.1% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mvfD00 | 2.10.260.10 | Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › | 0.76 | 56.0 | 5.94e-01 | 100.0% | 95.5% |
| 6tdxG01 | 3.40.1380.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit | 0.59 | 43.0 | 2.93e-01 | 82.4% | 73.8% |
| 1vq8R00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.59 | 48.0 | 3.59e-01 | 100.0% | 80.0% |
| 2x0nA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 41.0 | 2.88e-01 | 76.5% | 39.3% |
| 4wwmA00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.57 | 40.0 | 3.63e-01 | 80.4% | 67.1% |
| 3bzbB00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 40.0 | 2.73e-01 | 78.4% | 36.5% |
| 1vlrA01 | 3.30.200.40 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain | 0.55 | 39.0 | 3.15e-01 | 74.5% | 89.8% |
| 2f7sA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 35.0 | 2.52e-01 | 70.6% | 98.9% |
| 1ev0A00 | 3.30.1070.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle; Chain A › Cell division topological specificity factor MinE | 0.51 | 40.0 | 3.89e-01 | 92.2% | 82.8% |
| 3q6bA02 | 3.10.20.310 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac | 0.50 | 36.0 | 3.27e-01 | 82.4% | 54.1% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4965853 | 1.1.3.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › PF26227 | 0.83 | 70.0 | 6.54e-01 | 100.0% | 75.4% |
| 4967714 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.78 | 58.0 | 5.55e-01 | 100.0% | 68.3% |
| 5031039 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.78 | 57.0 | 6.04e-01 | 100.0% | 88.9% |
| 4975618 | 1.1.3.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB | 0.69 | 50.0 | 5.28e-01 | 90.2% | 91.1% |
| 2755609 | 218.2.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 | 0.58 | 48.0 | 3.46e-01 | 98.0% | 46.4% |
| 3284913 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.57 | 48.0 | 4.47e-01 | 98.0% | 78.5% |
| 3835236 | 244.4.1.1 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Complex1_49kDa | 0.55 | 41.0 | 3.20e-01 | 82.4% | 87.8% |
| 5031876 | 4333.1.1.6 ↗ | a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › M_Eco57I_C | 0.54 | 40.0 | 2.60e-01 | 90.2% | 68.5% |
| 3334663 | 206.1.1.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH | 0.53 | 39.0 | 2.45e-01 | 88.2% | 28.7% |
| 3785536 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 35.0 | 3.47e-01 | 70.6% | 70.9% |
| 4101315 | 7519.1.1.1 ↗ | a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt | 0.52 | 38.0 | 2.46e-01 | 84.3% | 42.7% |
| 4964225 | 876.1.1.4 ↗ | a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF262 | 0.51 | 39.0 | 2.86e-01 | 86.3% | 44.7% |
| 5077637 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.50 | 39.0 | 3.04e-01 | 90.2% | 85.4% |