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IMGVR_UViG_3300028378_000426-3300028378-Ga0306868_10061521
Arc-VirIMGVR_UViG_3300028378_000426-3300028378-Ga0306868_10061521
Identity
- Kingdom:
- archaea
Quality
94.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-57
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1byrA00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.67 | 56.0 | 3.96e-01 | 100.0% | 29.6% |
| 4ggjA00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.65 | 53.0 | 3.71e-01 | 100.0% | 26.7% |
| 3hsiA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.65 | 54.0 | 3.49e-01 | 100.0% | 19.2% |
| 4urjD00 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.64 | 52.0 | 3.58e-01 | 100.0% | 24.7% |
| 3cerA02 | 3.30.420.150 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Exopolyphosphatase. Domain 2 | 0.64 | 56.0 | 3.62e-01 | 100.0% | 75.5% |
| 1nz0D00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.61 | 44.0 | 3.33e-01 | 78.3% | 60.4% |
| 1ig8A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 47.0 | 3.48e-01 | 100.0% | 36.6% |
| 1iowA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 43.0 | 3.17e-01 | 95.7% | 54.4% |
| 4hkqA04 | 3.10.20.370 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.55 | 45.0 | 3.96e-01 | 100.0% | 86.8% |
| 4feiA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 47.0 | 3.67e-01 | 100.0% | 57.8% |
| 3glaA00 | 2.60.40.790 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 45.0 | 3.64e-01 | 100.0% | 66.0% |
| 3mdqA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 42.0 | 3.28e-01 | 100.0% | 46.3% |
| 1jkfA03 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 37.0 | 3.46e-01 | 76.1% | 58.3% |
| 1a21B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 46.0 | 3.58e-01 | 100.0% | 90.8% |
| 6ap4B02 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.52 | 44.0 | 3.21e-01 | 100.0% | 61.7% |
| 3hduA00 | 3.10.129.10 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase | 0.52 | 37.0 | 2.63e-01 | 78.3% | 23.7% |
| 5ekaA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.51 | 36.0 | 2.96e-01 | 78.3% | 41.2% |
ECOD (39)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036368 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.80 | 68.0 | 4.61e-01 | 100.0% | 26.9% |
| 5048014 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.77 | 64.0 | 4.34e-01 | 100.0% | 26.9% |
| 5066796 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.76 | 62.0 | 4.40e-01 | 93.5% | 30.3% |
| 5067246 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.75 | 68.0 | 4.47e-01 | 100.0% | 27.8% |
| 4991151 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.75 | 58.0 | 3.94e-01 | 100.0% | 23.6% |
| 5054726 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.74 | 62.0 | 4.39e-01 | 100.0% | 31.4% |
| 3965027 | 300.1.1.5 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › RE_NgoFVII | 0.71 | 62.0 | 4.28e-01 | 100.0% | 31.2% |
| 5063988 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.71 | 59.0 | 4.55e-01 | 100.0% | 40.9% |
| 3657160 | 300.1.1.1 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc | 0.70 | 58.0 | 3.86e-01 | 95.7% | 29.3% |
| 4928167 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.70 | 57.0 | 3.79e-01 | 100.0% | 22.1% |
| 3661989 | 300.1.1.16 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc, PLDc_2 | 0.70 | 59.0 | 4.19e-01 | 100.0% | 38.3% |
| 5014761 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.69 | 57.0 | 4.02e-01 | 100.0% | 28.4% |
| 4983383 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.69 | 59.0 | 4.18e-01 | 100.0% | 31.8% |
| 3946929 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.68 | 56.0 | 3.98e-01 | 100.0% | 29.2% |
| 5043339 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.67 | 55.0 | 3.98e-01 | 100.0% | 31.7% |
| 5075695 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.66 | 54.0 | 3.90e-01 | 100.0% | 30.7% |
| 5045026 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.66 | 47.0 | 3.51e-01 | 78.3% | 30.8% |
| 3272677 | 300.1.1.3 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › Tyr-DNA_phospho | 0.64 | 53.0 | 3.51e-01 | 100.0% | 30.7% |
| 4423909 | 300.1.1.4 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › FAM83 | 0.61 | 51.0 | 3.42e-01 | 100.0% | 23.5% |
| 3738706 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.60 | 42.0 | 3.06e-01 | 73.9% | 30.0% |
| 4382988 | 2484.1.1.174 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH | 0.58 | 45.0 | 3.43e-01 | 100.0% | 35.0% |
| 4872018 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.57 | 39.0 | 3.06e-01 | 73.9% | 34.3% |
| 3929202 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.57 | 49.0 | 3.78e-01 | 100.0% | 66.7% |
| 3412152 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.56 | 49.0 | 3.54e-01 | 100.0% | 60.0% |
| 3921654 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.56 | 48.0 | 3.49e-01 | 100.0% | 60.9% |
| 1309072 | 10.12.1.3 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_1 | 0.55 | 38.0 | 3.25e-01 | 73.9% | 44.2% |
| 3651779 | 109.21.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain | 0.55 | 44.0 | 2.48e-01 | 100.0% | 7.1% |
| 3873544 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.55 | 46.0 | 3.39e-01 | 100.0% | 60.4% |
| 3574882 | 227.1.1.12 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 | 0.54 | 46.0 | 3.37e-01 | 100.0% | 51.4% |
| 3722808 | 192.7.1.40 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › APH | 0.54 | 43.0 | 3.09e-01 | 100.0% | 29.3% |
| 3798355 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.54 | 46.0 | 3.32e-01 | 100.0% | 50.7% |
| 3612141 | 719.1.1.5 ↗ | beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 | 0.54 | 46.0 | 3.34e-01 | 100.0% | 42.8% |
| 3058745 | 2484.1.1.97 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas9_RuvC | 0.53 | 39.0 | 4.06e-01 | 80.4% | 84.1% |
| 3680932 | 220.1.1.180 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7642 | 0.53 | 44.0 | 3.30e-01 | 93.5% | 89.6% |
| 3933392 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 45.0 | 3.50e-01 | 100.0% | 83.8% |
| 5041843 | 2484.1.1.43 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 | 0.52 | 43.0 | 2.92e-01 | 100.0% | 39.5% |
| 3698801 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.52 | 43.0 | 2.57e-01 | 100.0% | 77.0% |
| 3254798 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.51 | 43.0 | 3.31e-01 | 100.0% | 49.1% |
| 4938611 | 295.1.1.53 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 | 0.50 | 41.0 | 3.80e-01 | 100.0% | 71.9% |