IMGVR_UViG_3300028453_000046-3300028453-Ga0307246_10107472

Arc-Vir

Identity

66.0 mean pLDDT

Singleton — not in a non-trivial cluster

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 308-436

PDB

Domain cluster: rep: NC_029048.2__YP_009221738.1__PHICD211_20135__00153__D2-127

Pfam (3)

Accession	Name	Score	E-value	Q cov	HMM cov
PF02160.20 best	Peptidase_A3	21.8	1.60e-04	93.0%	47.6%
PF08284.17	RVP_2	52.2	8.10e-14	87.6%	74.3%
PF13650.12	Asp_protease_2	25.1	3.20e-05	72.9%	96.7%

D2 medium residues 98-248

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF19259.5 best	Ty3_capsid	44.1	2.20e-11	95.4%	62.6%
PF03732.24	Retrotrans_gag	41.4	1.90e-10	64.9%	96.9%

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4jkzA00	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.50	36.0	3.47e-01	74.2%	87.2%

ECOD (1)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3543872	170.1.1.22 ↗	alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › PF30901	0.91	48.0	6.76e-01	72.2%	100.0%