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IMGVR_UViG_3300028546_000001-3300028546-Ga0307748_12493
Arc-VirIMGVR_UViG_3300028546_000001-3300028546-Ga0307748_12493
Identity
- Kingdom:
- archaea
Quality
90.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 41-149
Domain cluster:
rep: IMGVR_UViG_3300012199_000008-3300012199-Ga0137383_100008429__D4-138
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03237.22 best | Terminase_6N | 22.6 | 1.00e-04 | 92.7% | 38.6% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jqdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 59.0 | 4.28e-01 | 92.7% | 55.9% |
| 3dmnA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 49.0 | 4.31e-01 | 99.1% | 52.8% |
| 3mq2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 58.0 | 4.61e-01 | 96.3% | 82.8% |
| 3rc3A03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 54.0 | 4.75e-01 | 100.0% | 61.6% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.65 | 56.0 | 4.58e-01 | 92.7% | 60.4% |
| 3mteA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 57.0 | 4.53e-01 | 97.2% | 83.1% |
| 3ccfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 55.0 | 4.24e-01 | 92.7% | 59.7% |
| 4rwzA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 57.0 | 4.67e-01 | 97.2% | 92.8% |
| 1bwpA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.64 | 55.0 | 4.48e-01 | 96.3% | 72.2% |
| 1aogA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.64 | 45.0 | 4.38e-01 | 92.7% | 66.1% |
| 8k1fC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 59.0 | 4.77e-01 | 100.0% | 88.3% |
| 3mczA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.63 | 54.0 | 4.13e-01 | 92.7% | 60.6% |
| 3kcnB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 48.0 | 4.43e-01 | 92.7% | 64.2% |
| 2awnD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.62 | 38.0 | 3.49e-01 | 90.8% | 46.2% |
| 7txuA02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.61 | 52.0 | 4.83e-01 | 91.7% | 74.5% |
| 3i3fB00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.61 | 42.0 | 3.99e-01 | 70.6% | 85.2% |
| 2as0A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 51.0 | 4.10e-01 | 92.7% | 64.2% |
| 3zl8A03 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.60 | 49.0 | 4.54e-01 | 96.3% | 69.1% |
| 5agaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 50.0 | 4.00e-01 | 89.9% | 67.5% |
| 1gg4A01 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.59 | 49.0 | 4.58e-01 | 96.3% | 72.1% |
| 8hi4A03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 48.0 | 3.99e-01 | 90.8% | 78.4% |
| 1q1rA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.59 | 45.0 | 4.24e-01 | 96.3% | 67.9% |
| 3rc3A04 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.56 | 44.0 | 4.10e-01 | 86.2% | 71.0% |
| 5oesA04 | 3.40.50.1760 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glutathione synthase, substrate-binding domain superfamily, eukaryotic | 0.56 | 41.0 | 3.98e-01 | 91.7% | 68.5% |
| 4n03A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 43.0 | 3.76e-01 | 90.8% | 52.8% |
| 3islA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.55 | 45.0 | 3.46e-01 | 89.0% | 41.5% |
| 4oo3A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 44.0 | 4.02e-01 | 87.2% | 80.7% |
| 1hkuA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 3.78e-01 | 92.7% | 69.6% |
| 6ifsB01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 47.0 | 3.94e-01 | 100.0% | 65.3% |
| 3ctpA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 40.0 | 3.69e-01 | 89.0% | 62.3% |
| 5b55A01 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 45.0 | 3.80e-01 | 94.5% | 59.5% |
| 4ccsA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 36.0 | 3.54e-01 | 95.4% | 63.1% |
| 3n4fA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.53 | 46.0 | 3.57e-01 | 100.0% | 57.4% |
| 1fvpA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.52 | 44.0 | 3.56e-01 | 96.3% | 69.3% |
| 1ak2A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 3.27e-01 | 85.3% | 77.7% |
| 5uidA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.51 | 41.0 | 3.26e-01 | 89.0% | 45.1% |
| 4irxA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 41.0 | 3.69e-01 | 90.8% | 68.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4973762 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.85 | 69.0 | 5.22e-01 | 100.0% | 38.7% |
| 3986759 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.84 | 70.0 | 5.46e-01 | 100.0% | 44.7% |
| 3942672 | 2004.1.1.99 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_6N | 0.80 | 70.0 | 5.42e-01 | 100.0% | 45.9% |
| 4954543 | 2004.1.1.117 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Terminase_3 | 0.75 | 71.0 | 5.32e-01 | 100.0% | 45.4% |
| 5074355 | 2003.1.5.81 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 | 0.67 | 57.0 | 4.49e-01 | 92.7% | 67.1% |
| 3211915 | 2004.1.1.30 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C | 0.66 | 52.0 | 4.17e-01 | 84.4% | 61.9% |
| 5003976 | 2003.1.5.111 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Rsm22 | 0.64 | 55.0 | 3.94e-01 | 92.7% | 49.7% |
| 3791564 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.63 | 48.0 | 4.43e-01 | 90.8% | 62.1% |
| 5047993 | 2003.1.5.67 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_12 | 0.62 | 57.0 | 4.23e-01 | 100.0% | 75.1% |
| 3991573 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.60 | 54.0 | 4.30e-01 | 100.0% | 49.3% |
| 4383890 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.60 | 54.0 | 4.16e-01 | 100.0% | 45.7% |
| 3715084 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.59 | 53.0 | 3.90e-01 | 100.0% | 39.0% |
| 4391382 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.59 | 53.0 | 4.10e-01 | 100.0% | 45.7% |
| 4938469 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.58 | 50.0 | 4.30e-01 | 96.3% | 75.4% |
| 3524397 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.57 | 47.0 | 3.85e-01 | 90.8% | 62.9% |
| 4306897 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.57 | 50.0 | 3.99e-01 | 100.0% | 81.3% |
| 4670246 | 7512.1.1.13 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › PS_pyruv_trans | 0.57 | 43.0 | 3.84e-01 | 89.0% | 56.8% |
| 10557 | 7547.1.1.2 ↗ | a/b three-layered sandwiches › Hypothetical protein TT1679 › Hypothetical protein TT1679 › Hypothetical protein TT1679 › DUF436 | 0.56 | 42.0 | 3.54e-01 | 78.9% | 60.8% |
| 3649306 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.56 | 51.0 | 4.34e-01 | 100.0% | 87.8% |
| 5078957 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.55 | 49.0 | 3.72e-01 | 100.0% | 58.9% |
| 3586031 | 7573.1.1.1 ↗ | a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran | 0.54 | 41.0 | 3.27e-01 | 89.0% | 39.6% |
| 4950793 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.54 | 48.0 | 2.93e-01 | 100.0% | 40.0% |
| 3957178 | 2003.2.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Molybdopterin | 0.53 | 42.0 | 3.14e-01 | 84.4% | 85.8% |
| 3875412 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.53 | 47.0 | 3.79e-01 | 100.0% | 71.8% |
| 3245843 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.53 | 48.0 | 3.83e-01 | 100.0% | 69.1% |
| 3992018 | 207.1.1.102 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_1+LRR_8+LRR_14 | 0.53 | 45.0 | 3.96e-01 | 95.4% | 81.8% |
| 4369536 | 2003.1.10.2 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain › Dala_Dala_lig_N | 0.53 | 34.0 | 3.69e-01 | 75.2% | 77.8% |
| 4169163 | 2007.1.7.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › DHQ_synthase | 0.52 | 43.0 | 3.68e-01 | 92.7% | 63.2% |
| 3395584 | 2005.1.1.36 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › SLC12 | 0.52 | 38.0 | 3.41e-01 | 94.5% | 53.1% |
| 3396025 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.52 | 42.0 | 3.94e-01 | 89.9% | 71.9% |
| 3787704 | 2007.1.4.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › DAGK_cat | 0.51 | 36.0 | 3.22e-01 | 83.5% | 50.6% |
| 4974662 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.51 | 45.0 | 3.78e-01 | 100.0% | 79.5% |
| 4305687 | 2007.1.2.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF3798 | 0.50 | 39.0 | 3.54e-01 | 83.5% | 70.0% |