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IMGVR_UViG_3300028546_000001-3300028546-Ga0307748_124959

Arc-Vir

IMGVR_UViG_3300028546_000001-3300028546-Ga0307748_124959

Quality

67.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-99
PDB
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 68.0 4.98e-01 96.9% 44.2%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 68.0 4.94e-01 96.9% 43.4%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 67.0 4.90e-01 96.9% 44.5%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.72 65.0 5.87e-01 96.9% 85.9%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 65.0 4.77e-01 97.9% 43.4%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 65.0 4.65e-01 96.9% 42.6%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 64.0 4.63e-01 96.9% 42.6%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.71 63.0 4.59e-01 96.9% 42.8%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 63.0 4.57e-01 96.9% 44.7%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.69 62.0 4.54e-01 97.9% 43.3%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.69 62.0 4.56e-01 97.9% 42.0%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.68 57.0 5.13e-01 100.0% 66.2%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.67 59.0 5.46e-01 96.9% 87.1%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.64 58.0 5.34e-01 96.9% 86.7%
3a1jB00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.64 58.0 4.12e-01 96.9% 39.0%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 58.0 5.19e-01 100.0% 74.0%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 56.0 5.14e-01 96.9% 82.1%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.63 55.0 4.10e-01 96.9% 42.6%
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 54.0 5.00e-01 99.0% 74.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.63 56.0 5.28e-01 96.9% 88.5%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.62 54.0 3.84e-01 96.9% 43.6%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 55.0 5.05e-01 96.9% 80.6%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 55.0 5.20e-01 96.9% 88.5%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 55.0 5.07e-01 96.9% 82.0%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.58 43.0 4.26e-01 96.9% 74.8%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 4.41e-01 93.8% 86.2%
1e8oD00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.56 38.0 4.18e-01 93.8% 88.2%
4joiC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 41.0 3.89e-01 80.2% 94.1%
2dmgA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 39.0 3.47e-01 76.0% 93.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 27.0 3.24e-01 96.9% 78.9%
2o1uB01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 47.0 3.89e-01 97.9% 95.2%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 30.0 3.58e-01 83.3% 93.1%
1bf3A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 42.0 3.24e-01 91.7% 94.6%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 30.0 3.49e-01 83.3% 85.9%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 25.0 3.24e-01 81.2% 95.6%
ECOD (92)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4232371 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 71.0 6.53e-01 96.9% 90.0%
4995027 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 66.0 5.97e-01 100.0% 70.4%
5000468 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.77 70.0 6.31e-01 96.9% 88.8%
4646871 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 70.0 6.27e-01 96.9% 86.4%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.76 69.0 6.05e-01 96.9% 83.7%
4939066 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 69.0 6.19e-01 96.9% 83.7%
4991675 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.76 69.0 6.26e-01 96.9% 87.2%
5052551 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 69.0 6.21e-01 96.9% 84.0%
4936050 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.75 69.0 6.19e-01 96.9% 87.2%
143269 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 63.0 5.73e-01 100.0% 69.6%
4043935 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.74 64.0 5.72e-01 100.0% 68.5%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.74 68.0 6.06e-01 96.9% 82.8%
5033948 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 67.0 5.97e-01 96.9% 82.3%
4976500 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 66.0 5.97e-01 96.9% 82.8%
4660283 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 66.0 6.02e-01 96.9% 88.0%
4948360 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 67.0 5.97e-01 96.9% 81.4%
5051689 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.73 66.0 5.99e-01 96.9% 87.2%
4987602 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.73 61.0 5.58e-01 100.0% 69.6%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.73 65.0 5.88e-01 100.0% 73.6%
4934002 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 65.0 5.85e-01 96.9% 83.1%
3551142 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.72 64.0 5.56e-01 96.9% 78.6%
4172290 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.72 61.0 5.49e-01 100.0% 67.7%
167574 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.72 65.0 5.78e-01 96.9% 81.7%
3623607 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.72 64.0 5.62e-01 96.9% 82.9%
4936049 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.72 60.0 5.58e-01 100.0% 72.5%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.72 65.0 5.70e-01 96.9% 85.9%
3602548 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.72 60.0 5.50e-01 100.0% 69.6%
3534499 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.72 64.0 5.54e-01 96.9% 86.2%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.71 64.0 5.52e-01 96.9% 87.6%
4929645 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.71 64.0 5.82e-01 96.9% 85.6%
3798354 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 64.0 5.66e-01 96.9% 85.9%
5047575 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 63.0 5.77e-01 96.9% 85.6%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 60.0 5.40e-01 100.0% 67.7%
4057537 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 63.0 5.78e-01 96.9% 83.2%
1290662 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.71 64.0 5.51e-01 96.9% 77.6%
5078494 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 60.0 5.46e-01 100.0% 70.4%
5023031 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 63.0 5.74e-01 96.9% 86.4%
3256386 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.71 63.0 5.58e-01 96.9% 85.9%
1822927 227.1.1.2 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.71 63.0 5.24e-01 96.9% 66.3%
5070586 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 59.0 5.45e-01 100.0% 70.4%
3624708 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.71 63.0 5.59e-01 96.9% 83.0%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.71 63.0 5.67e-01 96.9% 84.6%
4980359 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.71 59.0 5.49e-01 100.0% 72.5%
4178829 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 63.0 5.74e-01 96.9% 81.6%
5052550 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 63.0 5.73e-01 96.9% 87.2%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 64.0 5.25e-01 97.9% 81.8%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 64.0 5.37e-01 97.9% 85.2%
5043506 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 63.0 5.77e-01 97.9% 84.0%
162047 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 63.0 5.74e-01 97.9% 82.7%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 63.0 5.75e-01 96.9% 83.1%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.70 63.0 5.47e-01 96.9% 87.1%
5037344 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 59.0 5.47e-01 100.0% 73.3%
5990 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 62.0 5.72e-01 96.9% 83.6%
5027066 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.70 62.0 5.71e-01 97.9% 84.0%
3230925 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.70 62.0 5.57e-01 96.9% 86.2%
3256904 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.69 62.0 5.65e-01 96.9% 88.0%
5056758 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.69 65.0 6.05e-01 100.0% 89.6%
2442100 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 61.0 5.46e-01 96.9% 80.1%
5074320 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.69 61.0 5.52e-01 96.9% 86.2%
4983063 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 59.0 5.39e-01 100.0% 71.2%
2392830 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 62.0 5.57e-01 97.9% 81.7%
4937819 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 58.0 5.31e-01 100.0% 70.4%
4599875 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 62.0 5.74e-01 97.9% 85.0%
4026073 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.69 62.0 5.63e-01 97.9% 92.0%
5044014 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.68 61.0 5.78e-01 97.9% 91.3%
3351110 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.68 62.0 5.77e-01 100.0% 94.2%
4870150 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.68 60.0 5.40e-01 96.9% 80.6%
4142781 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.68 60.0 5.50e-01 96.9% 84.0%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.68 61.0 5.26e-01 96.9% 89.5%
4302174 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.68 60.0 5.51e-01 97.9% 84.0%
4939065 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.67 59.0 5.52e-01 96.9% 85.0%
4941928 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.67 59.0 5.53e-01 96.9% 86.7%
4934001 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.67 59.0 5.42e-01 96.9% 87.2%
3223650 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.67 59.0 5.12e-01 96.9% 83.4%
3839477 227.1.1.7 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.66 60.0 5.50e-01 99.0% 76.0%
4059128 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.66 58.0 5.42e-01 96.9% 85.0%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.66 58.0 4.99e-01 96.9% 71.4%
4407599 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.66 57.0 5.21e-01 100.0% 72.0%
5056757 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.66 58.0 5.30e-01 96.9% 83.2%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.65 58.0 5.33e-01 96.9% 87.2%
3625037 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.65 58.0 5.12e-01 96.9% 85.9%
3789625 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.64 57.0 5.10e-01 96.9% 88.1%
3743106 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 58.0 5.01e-01 97.9% 86.9%
3558235 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.64 57.0 5.08e-01 96.9% 85.9%
3598260 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.64 54.0 4.96e-01 92.7% 90.4%
3719897 227.1.1.18 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DUF7881_C 0.62 53.0 4.89e-01 99.0% 72.0%
4990115 318.1.1.0 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.57 33.0 3.45e-01 88.5% 60.0%
4941490 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 44.0 3.96e-01 93.8% 63.7%
5014879 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 48.0 4.50e-01 96.9% 86.1%
3633647 896.1.1.0 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.53 33.0 3.82e-01 89.6% 90.8%
3385764 4954.1.1.0 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.52 39.0 4.29e-01 90.6% 100.0%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 39.0 4.23e-01 87.5% 96.2%