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IMGVR_UViG_3300028567_000036-3300028567-Ga0255342_100210419

Arc-Vir

IMGVR_UViG_3300028567_000036-3300028567-Ga0255342_100210419

Quality

77.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 34-93
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mvpA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.79 70.0 5.16e-01 98.3% 83.2%
3b0bB00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.79 66.0 5.66e-01 95.0% 61.9%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.76 61.0 5.09e-01 88.3% 78.6%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.75 60.0 5.94e-01 88.3% 84.4%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.74 58.0 5.47e-01 88.3% 69.9%
4ixjA01 3.30.1300.80 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.74 58.0 5.28e-01 83.3% 66.2%
3cxbA03 1.10.1740.30 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Secreted effector protein SifA helical domain 0.73 54.0 4.92e-01 80.0% 82.7%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 49.0 3.91e-01 71.7% 38.2%
2mabA00 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.71 53.0 4.38e-01 88.3% 44.0%
4g6dB02 6.10.140.1800 Special › Helix non-globular › Helix Hairpins › 0.71 55.0 4.99e-01 85.0% 76.5%
1fouA01 1.10.246.30 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.71 55.0 5.13e-01 93.3% 67.6%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.69 52.0 4.10e-01 81.7% 70.2%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.69 47.0 4.61e-01 71.7% 74.2%
2l09A01 1.10.8.550 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B 0.68 43.0 4.59e-01 71.7% 73.1%
1ailA00 1.10.287.10 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding 0.68 44.0 4.27e-01 96.7% 57.1%
1ad6A00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.68 61.0 4.30e-01 100.0% 64.9%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.68 47.0 4.28e-01 75.0% 54.3%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.67 49.0 3.83e-01 80.0% 35.1%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.67 43.0 4.39e-01 71.7% 67.2%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.66 44.0 4.24e-01 80.0% 60.3%
1i1rB00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.65 52.0 3.76e-01 86.7% 86.8%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.64 52.0 4.46e-01 88.3% 78.4%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.64 49.0 4.54e-01 81.7% 93.3%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 46.0 4.29e-01 75.0% 61.6%
6w6jD01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.64 48.0 3.74e-01 80.0% 70.2%
2no4A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 46.0 4.30e-01 76.7% 73.3%
2rgnB01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.64 50.0 3.49e-01 86.7% 86.3%
3dwgA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 48.0 3.38e-01 83.3% 39.3%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.62 48.0 3.59e-01 83.3% 66.9%
2hoqA02 1.10.150.520 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.62 42.0 3.92e-01 86.7% 54.4%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.62 47.0 3.81e-01 80.0% 50.5%
2w43A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 44.0 4.53e-01 75.0% 78.9%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.61 47.0 2.89e-01 85.0% 12.9%
1gaxA05 1.10.287.380 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain 0.61 48.0 4.47e-01 83.3% 78.1%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 47.0 3.89e-01 86.7% 50.0%
4i9oA00 1.10.246.20 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain 0.60 47.0 4.34e-01 86.7% 65.4%
1gakA00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.60 45.0 3.57e-01 85.0% 37.2%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 47.0 3.54e-01 86.7% 90.8%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.60 49.0 3.23e-01 93.3% 97.8%
2aa4A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 43.0 3.36e-01 78.3% 51.1%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.59 51.0 3.57e-01 96.7% 78.8%
6tqfA01 1.20.1560.10 Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain 0.59 49.0 3.00e-01 91.7% 19.2%
1knzA01 6.10.280.20 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Rotavirus non-structural protein NSP3, N-terminal domain 0.59 51.0 4.36e-01 100.0% 98.0%
4n1vA00 4.10.520.10 Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins 0.59 42.0 3.64e-01 75.0% 78.5%
1p5jA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 41.0 2.85e-01 75.0% 41.7%
3vkhB07 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 44.0 3.16e-01 85.0% 76.7%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.58 46.0 4.20e-01 88.3% 66.7%
5ux1D00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.57 48.0 3.31e-01 91.7% 38.1%
3mgdB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 41.0 3.23e-01 86.7% 73.7%
7tfmA01 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.54 46.0 3.57e-01 95.0% 75.4%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 37.0 3.61e-01 75.0% 98.5%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 40.0 3.42e-01 85.0% 70.3%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4990055 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 53.0 5.53e-01 73.3% 76.4%
3526552 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.78 59.0 4.98e-01 81.7% 51.0%
3344802 6158.1.1.0 alpha bundles › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region › Nucleoporin p58/p45 helical region 0.78 56.0 5.47e-01 81.7% 69.2%
3984343 5054.1.1.0 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels 0.77 60.0 4.11e-01 86.7% 25.5%
3687491 129.1.1.82 alpha arrays › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › 6-phosphogluconate dehydrogenase C-terminal domain-like › Aa_trans 0.76 65.0 5.09e-01 98.3% 45.0%
4020548 7579.1.1.58 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF829 0.76 54.0 3.46e-01 81.7% 15.6%
5058468 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.76 53.0 4.89e-01 75.0% 58.7%
3518379 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.75 59.0 6.13e-01 86.7% 92.7%
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.75 54.0 5.32e-01 76.7% 78.5%
3387896 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.74 48.0 4.61e-01 70.0% 57.1%
3221764 603.2.1.0 alpha bundles › STAT-like › STAT › STAT 0.74 50.0 4.44e-01 70.0% 52.5%
3340355 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 53.0 5.11e-01 83.3% 67.1%
185221 3502.1.1.1 alpha bundles › uncharacterized conserved protein › uncharacterized conserved protein › uncharacterized conserved protein › YebG 0.73 61.0 5.86e-01 90.0% 82.1%
3279519 191.1.1.0 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain 0.73 63.0 5.05e-01 98.3% 50.0%
3651508 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 52.0 5.24e-01 83.3% 76.7%
3482882 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.71 53.0 5.38e-01 86.7% 80.0%
2708987 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.70 47.0 4.37e-01 70.0% 60.0%
4934144 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 53.0 4.88e-01 83.3% 63.7%
4102862 2006.1.4.2 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.69 50.0 3.79e-01 76.7% 32.9%
3381517 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.68 54.0 4.34e-01 88.3% 60.8%
3274209 7064.1.1.1 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › VIT1 0.67 58.0 4.20e-01 95.0% 67.9%
4000626 5043.1.1.11 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › ATP_synt_H 0.67 48.0 4.39e-01 86.7% 57.5%
3831136 604.9.1.0 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.67 54.0 4.19e-01 86.7% 60.0%
3697477 7581.1.1.7 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › Ketoacyl-synt_C 0.67 53.0 3.21e-01 86.7% 14.7%
3785340 7581.1.1.3 a/b three-layered sandwiches › Thiolase-like › Thiolase-like › Thiolase-like › ketoacyl-synt,Ketoacyl-synt_C 0.66 52.0 2.90e-01 86.7% 6.6%
3876213 1045.1.1.0 alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 0.66 54.0 4.45e-01 90.0% 49.1%
4991104 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.66 59.0 3.70e-01 100.0% 26.3%
3942023 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.64 54.0 3.46e-01 93.3% 20.0%
5058151 6026.1.1.0 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain 0.63 55.0 5.36e-01 98.3% 95.4%
2833148 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.63 47.0 3.86e-01 81.7% 60.9%
4082855 106.1.1.4 alpha arrays › Globin-like › Globin-like › Globin-like › Rsbr_N 0.63 48.0 3.71e-01 85.0% 77.1%
3290367 3470.1.1.0 extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain 0.62 49.0 4.79e-01 85.0% 84.6%
2858351 1128.1.1.2 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 0.62 46.0 3.80e-01 81.7% 60.3%
3209229 3877.1.1.1 alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC › 60KD_IMP 0.61 55.0 3.56e-01 100.0% 52.1%
5053903 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 50.0 4.07e-01 93.3% 53.3%
3552184 1045.1.1.1 alpha bundles › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Rad50-binding domain of Mre11 › Mre11_DNA_bind 0.61 47.0 3.98e-01 88.3% 49.5%
5010630 6132.1.1.0 alpha bundles › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain › Nudix hydrolase N-terminal dimerization domain 0.60 42.0 4.10e-01 78.3% 66.2%
4985856 2006.1.1.1 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.60 46.0 3.14e-01 90.0% 21.7%
4276746 192.1.1.40 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › VMA21 0.60 49.0 4.70e-01 88.3% 77.9%
4045980 2007.1.14.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › Ferrochelatase 0.59 43.0 3.21e-01 85.0% 30.7%
3602245 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.59 40.0 3.94e-01 70.0% 72.3%
3477822 1147.1.1.1 alpha bundles › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › RNA polymerase II elongation factor ELL2 C-terminal domain › Occludin_ELL 0.59 49.0 3.69e-01 86.7% 65.6%
3396806 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 51.0 4.41e-01 95.0% 71.1%
2557383 1128.1.1.1 alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.57 47.0 3.68e-01 90.0% 71.5%
3269970 1128.1.1.0 alpha bundles › LYR protein › LYR protein › LYR protein 0.56 49.0 4.07e-01 96.7% 85.7%
3248074 376.1.1.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.56 51.0 3.65e-01 96.7% 76.8%
3391109 3684.1.1.21 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › TMEM138 0.54 46.0 3.50e-01 93.3% 65.0%