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IMGVR_UViG_3300028568_000046-3300028568-Ga0255345_100206333

Arc-Vir

IMGVR_UViG_3300028568_000046-3300028568-Ga0255345_100206333

Identity

Kingdom:
archaea

Quality

95.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 16-88
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3r5dA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.71 41.0 4.94e-01 72.6% 100.0%
3fsyA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.62 35.0 4.22e-01 72.6% 100.0%
2rijA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.60 35.0 4.07e-01 78.1% 100.0%
2yu4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 42.0 3.90e-01 90.4% 75.5%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3689918 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.73 55.0 5.04e-01 80.8% 85.3%
3409733 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 52.0 5.61e-01 100.0% 100.0%
3251812 904.1.1.1 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain › zf-B_box 0.67 44.0 5.00e-01 98.6% 100.0%
3743913 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.67 53.0 5.61e-01 86.3% 98.5%
3786603 376.1.1.106 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF29452 0.64 46.0 4.53e-01 78.1% 100.0%
3905663 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.64 44.0 4.56e-01 74.0% 85.7%
4011231 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 44.0 4.32e-01 76.7% 76.2%
3911271 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 49.0 5.12e-01 87.7% 100.0%
4025773 376.1.1.32 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var 0.60 51.0 4.41e-01 94.5% 80.9%
3614499 3860.1.1.0 ↗ alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.60 48.0 4.03e-01 90.4% 57.9%
None — 0.59 45.0 4.80e-01 89.0% 100.0%
3928303 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.59 48.0 5.05e-01 87.7% 100.0%
3894502 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.59 42.0 4.63e-01 79.5% 100.0%
3254552 376.1.1.31 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_5 0.59 48.0 4.96e-01 97.3% 97.1%
3266802 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 43.0 4.02e-01 80.8% 63.2%
3596561 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.58 44.0 4.46e-01 83.6% 85.7%
3410722 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.58 44.0 4.75e-01 84.9% 100.0%
3211768 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 41.0 3.72e-01 78.1% 58.1%
3927096 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.57 45.0 4.44e-01 89.0% 86.3%
3614999 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.55 45.0 4.28e-01 91.8% 87.8%
3716962 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.55 48.0 3.67e-01 100.0% 61.7%
3782574 376.1.1.61 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › Rtf2 0.54 42.0 4.35e-01 87.7% 91.4%
4030693 376.1.1.23 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_2 0.54 43.0 3.63e-01 89.0% 61.5%
3784599 2484.1.1.153 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 0.52 37.0 2.53e-01 79.5% 91.1%