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IMGVR_UViG_3300028568_000046-3300028568-Ga0255345_100206337
Arc-VirIMGVR_UViG_3300028568_000046-3300028568-Ga0255345_100206337
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-83
Domain cluster:
rep: OR576727.1__WNM70288.1__X__00195__D5-83
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.67 | 56.0 | 5.25e-01 | 100.0% | 74.5% |
| 2p5vA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 33.0 | 4.05e-01 | 96.3% | 75.0% |
| 1u2wD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 36.0 | 3.43e-01 | 98.8% | 45.7% |
| 4a6dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 36.0 | 3.43e-01 | 97.5% | 45.7% |
| 1d1lA00 | 3.30.240.10 | Alpha Beta › 2-Layer Sandwich › CRO Repressor › CRO Repressor | 0.64 | 30.0 | 3.39e-01 | 100.0% | 57.4% |
| 2r3sB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.62 | 33.0 | 3.39e-01 | 97.5% | 50.6% |
| 3b02A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 38.0 | 3.78e-01 | 96.3% | 60.0% |
| 2ys9A00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.60 | 32.0 | 3.40e-01 | 92.6% | 58.6% |
| 2xkoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 37.0 | 3.59e-01 | 93.8% | 55.3% |
| 1ft9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 36.0 | 3.72e-01 | 96.3% | 63.3% |
| 3kxaA02 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.59 | 42.0 | 4.50e-01 | 100.0% | 93.9% |
| 1d02B00 | 3.40.580.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RI Endonuclease; Chain A › Eco RI Endonuclease, subunit A | 0.58 | 44.0 | 3.31e-01 | 81.5% | 86.0% |
| 2llkA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 30.0 | 3.76e-01 | 96.3% | 100.0% |
| 3u3wA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.55 | 39.0 | 4.16e-01 | 98.8% | 88.4% |
| 4arnA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.55 | 40.0 | 2.77e-01 | 77.8% | 33.9% |
| 1f3hB00 | 1.10.1170.10 | Mainly Alpha › Orthogonal Bundle › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A › Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A | 0.54 | 34.0 | 2.95e-01 | 84.0% | 38.5% |
| 3ii7A00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.53 | 45.0 | 3.19e-01 | 98.8% | 67.0% |
| 5b7sB01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 41.0 | 3.48e-01 | 85.2% | 69.6% |
| 7z7vE01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.51 | 33.0 | 3.77e-01 | 93.8% | 90.0% |
| 2ch1A01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.50 | 39.0 | 3.37e-01 | 86.4% | 64.7% |
| 1dp4C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 41.0 | 3.10e-01 | 90.1% | 95.6% |
| 7vw6B01 | 1.10.10.1590 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E | 0.50 | 32.0 | 3.50e-01 | 77.8% | 79.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.89 | 83.0 | 8.38e-01 | 100.0% | 100.0% |
| 3928378 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 59.0 | 5.82e-01 | 86.4% | 75.3% |
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.71 | 61.0 | 5.91e-01 | 98.8% | 85.6% |
| 3944184 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 63.0 | 5.80e-01 | 100.0% | 86.7% |
| 5035857 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.70 | 33.0 | 4.17e-01 | 97.5% | 74.0% |
| 3274279 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 56.0 | 5.59e-01 | 88.9% | 84.7% |
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.66 | 56.0 | 5.27e-01 | 98.8% | 78.0% |
| 4166935 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.64 | 53.0 | 4.98e-01 | 98.8% | 75.0% |
| 5036923 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.64 | 56.0 | 3.46e-01 | 100.0% | 45.5% |
| 3952661 | 241.1.1.6 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › YbjN | 0.63 | 48.0 | 3.75e-01 | 81.5% | 65.3% |
| 5043009 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.62 | 55.0 | 3.38e-01 | 100.0% | 44.9% |
| 3942532 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.62 | 50.0 | 4.95e-01 | 100.0% | 87.1% |
| 3899940 | 331.4.1.9 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C | 0.60 | 48.0 | 4.87e-01 | 100.0% | 87.5% |
| 4941012 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.57 | 48.0 | 3.03e-01 | 100.0% | 46.7% |
| 3302248 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 33.0 | 3.95e-01 | 93.8% | 90.0% |
| 3918358 | 5.1.5.102 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › OLF | 0.55 | 41.0 | 2.92e-01 | 81.5% | 44.9% |
| 3485145 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.55 | 34.0 | 2.95e-01 | 84.0% | 37.8% |
| 3392094 | 381.1.1.1 ↗ | few secondary structure elements › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › Inhibitor of apoptosis (IAP) repeat › BIR | 0.53 | 34.0 | 2.93e-01 | 84.0% | 39.1% |
| 3262367 | 2.1.1.103 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PHA02142 | 0.52 | 35.0 | 2.90e-01 | 90.1% | 37.3% |
| 3917386 | 233.1.1.1 ↗ | a+b two layers › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC antigen-recognition domain › MHC_I | 0.52 | 37.0 | 2.91e-01 | 74.1% | 90.9% |
| 4150519 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.52 | 43.0 | 3.79e-01 | 91.4% | 88.6% |
D2
medium
residues 106-298
Domain cluster:
rep: gwf2_scaffold_96_prodigal-single.1__X__X__00228__D163-380
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2iu4A01 | 3.40.50.10440 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 | 0.61 | 46.0 | 4.92e-01 | 78.8% | 94.2% |
| 4ntcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 36.0 | 4.29e-01 | 94.3% | 96.0% |
| 2a1iA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 32.0 | 3.96e-01 | 94.3% | 89.7% |
| 1mqsA01 | 3.40.50.2060 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 | 0.54 | 29.0 | 3.30e-01 | 83.9% | 67.9% |
| 2ynmD01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.54 | 38.0 | 4.26e-01 | 94.8% | 93.9% |
| 4xvcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 49.0 | 4.19e-01 | 96.9% | 87.9% |
| 4bxoA01 | 3.40.50.10130 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 33.0 | 3.79e-01 | 94.8% | 85.2% |
| 6kd0A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.02e-01 | 96.9% | 91.0% |
| 3k6kA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.14e-01 | 96.9% | 87.5% |
| 1flaA00 | 3.40.50.360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain | 0.53 | 35.0 | 4.10e-01 | 94.8% | 93.5% |
| 4cgyA01 | 3.40.50.140 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.53 | 39.0 | 4.13e-01 | 92.2% | 83.0% |
| 4e94A02 | 3.50.30.60 | Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like | 0.53 | 35.0 | 3.61e-01 | 75.6% | 69.2% |
| 4wy5A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 48.0 | 4.00e-01 | 97.4% | 87.2% |
| 1jkmA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 47.0 | 3.78e-01 | 95.3% | 80.7% |
| 5dn8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 38.0 | 4.06e-01 | 94.8% | 88.3% |
| 4fhzA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 45.0 | 4.38e-01 | 99.0% | 95.9% |
| 3d7rA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 46.0 | 4.00e-01 | 100.0% | 87.8% |
| 6kmoB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 45.0 | 3.78e-01 | 96.9% | 84.5% |
| 3pdiA01 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.50 | 37.0 | 4.12e-01 | 95.3% | 95.5% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3908657 | 2010.1.1.2 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 | 0.61 | 49.0 | 4.74e-01 | 83.4% | 82.4% |
| 3695492 | 2010.1.1.2 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 | 0.59 | 47.0 | 4.56e-01 | 83.9% | 82.7% |
| 4196873 | 2010.1.1.2 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › Dak1 | 0.59 | 46.0 | 4.87e-01 | 81.9% | 94.9% |
| 3059315 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.58 | 36.0 | 4.12e-01 | 94.8% | 84.2% |
| 4611335 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.57 | 38.0 | 3.06e-01 | 94.8% | 34.9% |
| 4392313 | 2006.1.3.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim | 0.54 | 38.0 | 4.23e-01 | 91.2% | 89.0% |
| 3318664 | 2008.1.1.151 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 | 0.54 | 39.0 | 4.23e-01 | 96.4% | 86.7% |
| None | — | 0.54 | 49.0 | 4.01e-01 | 96.9% | 84.9% | |
| 4985803 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 39.0 | 4.23e-01 | 75.6% | 93.9% |
| 3427403 | 2008.1.1.151 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF28664 | 0.52 | 38.0 | 4.10e-01 | 96.4% | 86.7% |
| 4009368 | 2007.1.14.7 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › HGD-D | 0.51 | 43.0 | 4.20e-01 | 89.1% | 86.9% |
| 3807300 | 7579.1.1.107 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_2 | 0.51 | 44.0 | 4.09e-01 | 94.8% | 80.0% |
| 152937 | 7579.1.1.107 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Peptidase_S9, Abhydrolase_2 | 0.50 | 45.0 | 4.40e-01 | 99.0% | 96.3% |
| 3191626 | 7579.1.1.36 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 | 0.50 | 45.0 | 3.73e-01 | 96.9% | 87.3% |