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IMGVR_UViG_3300028568_000046-3300028568-Ga0255345_100206343

Arc-Vir

IMGVR_UViG_3300028568_000046-3300028568-Ga0255345_100206343

Quality

94.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-70
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.70 62.0 4.32e-01 100.0% 31.7%
1dp4C02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.69 54.0 3.75e-01 82.4% 41.2%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.69 34.0 4.20e-01 98.5% 79.5%
3dbxA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.66 56.0 4.16e-01 97.1% 45.0%
2qmlA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 57.0 4.16e-01 100.0% 69.4%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.64 48.0 3.80e-01 79.4% 70.3%
5c5cA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.64 46.0 3.45e-01 76.5% 48.8%
3l4gC04 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.64 45.0 3.01e-01 75.0% 29.2%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.64 54.0 4.07e-01 97.1% 48.6%
4i14A02 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.63 49.0 4.00e-01 83.8% 81.0%
4g7nA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.63 53.0 4.32e-01 91.2% 70.2%
2xlpB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.63 38.0 2.44e-01 79.4% 12.2%
2bz0A00 3.40.50.10990 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › GTP cyclohydrolase II 0.61 52.0 3.95e-01 97.1% 83.3%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 52.0 4.41e-01 94.1% 71.7%
2xf4A00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.59 47.0 3.45e-01 92.6% 41.4%
2cr4A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 45.0 3.98e-01 82.4% 98.0%
7zqiA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 48.0 3.59e-01 92.6% 36.5%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.58 41.0 4.08e-01 75.0% 84.3%
2zwrB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 47.0 3.39e-01 92.6% 39.6%
3d2uE01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.57 48.0 3.58e-01 97.1% 44.7%
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 38.0 3.88e-01 95.6% 69.1%
1vq8N00 3.30.420.100 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.57 50.0 3.68e-01 100.0% 86.6%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.56 47.0 3.82e-01 94.1% 91.7%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 48.0 4.13e-01 95.6% 73.4%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.56 49.0 3.86e-01 97.1% 62.6%
2pm6D01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.25e-01 97.1% 31.1%
1kxqE00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 3.97e-01 97.1% 59.2%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.56 47.0 4.10e-01 100.0% 73.2%
2e4uA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.55 41.0 3.14e-01 82.4% 38.2%
2kc8A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.55 38.0 3.43e-01 98.5% 51.6%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.55 45.0 4.04e-01 92.6% 67.7%
2nlvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.55 45.0 3.99e-01 100.0% 70.5%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.55 45.0 3.89e-01 97.1% 57.1%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 44.0 2.83e-01 92.6% 92.8%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.96e-01 98.5% 96.4%
1d7bA00 2.60.40.1210 Mainly Beta › Sandwich › Immunoglobulin-like › Cellobiose dehydrogenase, cytochrome domain 0.54 43.0 3.27e-01 92.6% 95.1%
3gldA01 2.60.40.3050 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.13e-01 77.9% 93.7%
1clwA00 2.160.20.20 Mainly Beta › 3 Solenoid › Pectate Lyase C-like › 0.53 37.0 2.26e-01 75.0% 14.5%
6udkD00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.71e-01 97.1% 61.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.84e-01 80.9% 81.3%
2nvmA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.53 44.0 3.94e-01 100.0% 77.9%
2g9gA00 2.60.120.1020 Mainly Beta › Sandwich › Jelly Rolls › PAW domain 0.52 41.0 3.01e-01 86.8% 68.8%
2jkbA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.52 42.0 2.76e-01 97.1% 95.1%
4cgyA01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 3.24e-01 92.6% 62.5%
3l2pA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.50e-01 92.6% 78.3%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.50 40.0 3.53e-01 92.6% 57.5%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 36.0 3.87e-01 94.1% 89.8%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957015 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.77 53.0 3.69e-01 70.6% 48.9%
4989790 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.71 48.0 3.49e-01 70.6% 52.0%
3800769 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.70 54.0 3.69e-01 82.4% 38.2%
3061339 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.70 56.0 3.44e-01 86.8% 43.9%
3524397 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.70 54.0 3.74e-01 82.4% 41.9%
3849532 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.70 56.0 3.93e-01 86.8% 50.5%
3247100 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.70 54.0 3.60e-01 82.4% 34.0%
3737235 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.69 37.0 3.81e-01 85.3% 53.8%
4139105 243.6.1.9 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.69 53.0 3.90e-01 80.9% 44.7%
3389834 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.69 54.0 3.70e-01 82.4% 54.1%
3403871 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.68 55.0 3.87e-01 86.8% 56.6%
4865228 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.68 48.0 4.24e-01 73.5% 99.0%
3238926 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.68 49.0 3.56e-01 76.5% 42.2%
None 0.67 48.0 2.99e-01 75.0% 21.3%
None 0.67 48.0 2.89e-01 76.5% 22.0%
3516546 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.65 50.0 3.60e-01 82.4% 55.8%
3703176 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.64 37.0 4.32e-01 82.4% 86.4%
3908899 213.1.1.35 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_CG 0.64 55.0 4.94e-01 98.5% 80.8%
4936581 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.64 54.0 5.11e-01 98.5% 94.1%
3249235 213.1.1.31 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 0.64 54.0 4.11e-01 97.1% 63.5%
4004358 252.2.1.3 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.63 38.0 4.33e-01 82.4% 84.0%
3916025 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.62 47.0 3.71e-01 82.4% 62.8%
3392668 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.61 42.0 4.32e-01 77.9% 75.4%
4026577 252.2.1.1 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.61 39.0 4.29e-01 85.3% 81.8%
3924385 1.1.15.0 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like 0.59 51.0 3.33e-01 98.5% 44.6%
3495598 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.58 39.0 3.11e-01 94.1% 32.0%
5033616 246.2.1.1 a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.57 41.0 2.81e-01 76.5% 31.8%
4983870 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.57 41.0 3.73e-01 76.5% 55.8%
4363733 4312.1.1.13 a+b two layers › RelE-like › RelE-like › RelE-like › Toxin_YhaV 0.57 41.0 3.28e-01 77.9% 50.3%
3484246 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 45.0 2.86e-01 100.0% 16.0%
3275971 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.57 49.0 3.12e-01 97.1% 37.5%
3600915 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.57 50.0 3.14e-01 100.0% 79.2%
5009170 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 41.0 4.02e-01 79.4% 82.7%
3623943 391.1.1.7 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.55 36.0 3.55e-01 70.6% 60.0%
3784839 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.55 41.0 3.67e-01 95.6% 56.0%
3308710 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 36.0 3.62e-01 72.1% 67.1%
5047201 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 3.06e-01 91.2% 27.4%
3785319 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.54 42.0 4.00e-01 92.6% 70.6%
5058742 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 44.0 2.68e-01 97.1% 42.7%
3930255 2.6.1.1 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.53 38.0 3.04e-01 76.5% 77.1%
4948574 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.53 43.0 2.72e-01 92.6% 85.8%
3496419 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 2.61e-01 100.0% 9.9%
3314307 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.52 45.0 2.91e-01 100.0% 26.2%
4993335 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 42.0 2.65e-01 97.1% 47.5%
4338934 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.52 38.0 3.95e-01 97.1% 83.1%
3740759 4099.1.1.3 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.52 38.0 3.97e-01 79.4% 88.3%
3899247 2007.1.2.4 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor 0.52 39.0 2.99e-01 86.8% 42.7%
4014784 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.52 42.0 3.82e-01 95.6% 74.5%
3194226 12.6.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C 0.52 35.0 3.98e-01 83.8% 98.0%
4927064 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 42.0 3.27e-01 97.1% 69.1%
3334023 5.3.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.51 45.0 3.59e-01 100.0% 85.2%