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IMGVR_UViG_3300028570_001062-3300028570-Ga0255341_101215911

Arc-Vir

IMGVR_UViG_3300028570_001062-3300028570-Ga0255341_101215911

Quality

82.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-63
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hm2A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 39.0 2.85e-01 70.7% 97.1%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 3.06e-01 75.9% 67.8%
3vwoA02 2.10.70.40 Mainly Beta › Ribbon › Complement Module; domain 1 › peptidoglycan hydrolase 0.57 39.0 4.10e-01 72.4% 100.0%
2xotA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.20e-01 72.4% 43.0%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 38.0 2.73e-01 75.9% 82.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 43.0 3.53e-01 89.7% 90.0%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 37.0 3.32e-01 79.3% 64.1%
3regA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.52 40.0 3.00e-01 89.7% 77.8%
5cm2Z00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 44.0 3.18e-01 98.3% 50.5%
1yu9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 38.0 2.94e-01 89.7% 78.4%
2fsdA00 2.60.40.2460 Mainly Beta › Sandwich › Immunoglobulin-like › Phage bIL170 RBP, head domain 0.50 34.0 2.84e-01 72.4% 74.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4997007 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.70 38.0 3.56e-01 72.4% 44.3%
4605892 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.67 44.0 4.43e-01 74.1% 66.1%
3346618 7519.1.1.1 a/b three-layered sandwiches › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP synthase (F1-ATPase), gamma subunit › ATP-synt 0.67 46.0 2.88e-01 72.4% 61.2%
3168821 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.64 48.0 3.03e-01 82.8% 27.6%
4958445 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.61 41.0 3.14e-01 70.7% 31.0%
3494598 7516.1.1.13 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_7C,Glyco_transf_7N 0.58 48.0 3.25e-01 100.0% 56.2%
3266052 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 46.0 3.53e-01 93.1% 91.0%
3373362 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 42.0 2.40e-01 100.0% 7.6%
3882664 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.56 49.0 4.50e-01 98.3% 81.3%
3401676 193.1.1.1 alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH 0.56 38.0 2.79e-01 70.7% 31.2%
3999096 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.55 47.0 4.37e-01 98.3% 81.3%
4966168 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 36.0 2.32e-01 70.7% 12.2%
None 0.53 32.0 2.60e-01 77.6% 27.2%
4231541 67.1.1.1 beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.53 44.0 3.91e-01 94.8% 78.8%
3176771 7516.1.1.7 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › UDPGP 0.52 42.0 2.60e-01 89.7% 70.5%
3673852 2004.1.1.548 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras, Roc 0.51 41.0 2.80e-01 91.4% 63.8%
3744519 101.1.2.535 alpha arrays › HTH › HTH › winged helix domain › PF25889 0.51 36.0 2.76e-01 79.3% 94.4%
5049862 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 2.70e-01 79.3% 60.6%
3993949 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.51 31.0 3.34e-01 75.9% 75.6%
D2 medium residues 115-209
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.58 40.0 3.15e-01 70.5% 67.6%
3tx6A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 40.0 3.14e-01 74.7% 91.8%
4hcjA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 38.0 3.18e-01 71.6% 91.3%
7kfuC02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.55 41.0 3.20e-01 82.1% 60.5%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.55 43.0 3.96e-01 84.2% 73.6%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 36.0 3.86e-01 72.6% 78.0%
7wu7501 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 31.0 2.89e-01 95.8% 42.9%
2ba0A03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.54 39.0 4.10e-01 75.8% 92.8%
2ljpA00 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 36.0 3.38e-01 77.9% 55.5%
1g0hA01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 33.0 2.98e-01 75.8% 46.0%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 37.0 2.45e-01 76.8% 76.2%
5ysmA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.51 39.0 2.61e-01 81.1% 29.1%
3ezjA02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 33.0 3.76e-01 72.6% 94.1%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4443044 2004.1.1.1014 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27228 0.87 66.0 4.43e-01 78.9% 24.8%
3787051 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 51.0 5.31e-01 77.9% 80.0%
3939641 2484.1.1.104 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_1 0.60 45.0 3.37e-01 78.9% 65.5%
5067961 2002.1.1.2 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Enolase_C 0.60 43.0 3.07e-01 75.8% 29.7%
5081050 4275.1.1.11 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › SU10_adaptor 0.59 49.0 3.93e-01 92.6% 85.0%
4030787 605.1.1.303 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Terminase_4 0.59 36.0 3.59e-01 90.5% 59.0%
3627409 6166.1.1.1 alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.58 40.0 3.17e-01 71.6% 83.5%
3969587 2.10.1.1 beta barrels › OB-fold › CheW › CheW › CheW 0.56 41.0 3.57e-01 77.9% 91.0%
3745755 3483.1.1.1 beta sandwiches › P2X purinoceptor › P2X purinoceptor › P2X purinoceptor › P2X_receptor 0.55 43.0 2.91e-01 84.2% 93.2%
3674534 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.55 38.0 2.99e-01 70.5% 74.0%
5012945 1075.3.1.1 alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.53 42.0 3.10e-01 85.3% 75.0%
428210 3243.1.1.1 alpha complex topology › VopL dimerization domain › VopL dimerization domain › VopL dimerization domain › VCD 0.53 42.0 3.27e-01 91.6% 36.7%
4871594 11.40.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-like domain in paramyxoviruses fusion protein › Immunoglobulin-like domain in paramyxoviruses fusion protein › Fusion_gly 0.53 41.0 2.84e-01 84.2% 45.4%
3249252 5001.1.1.0 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.52 40.0 2.75e-01 82.1% 56.4%
4937551 4018.1.1.2 a+b two layers › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › a+b domain in carbohydrate phosphatases › Inositol_P 0.50 33.0 2.64e-01 71.6% 32.5%
D3 medium residues 210-309
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2od5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 38.0 3.95e-01 71.0% 69.2%
3pxpA02 3.30.450.180 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.57 41.0 3.35e-01 75.0% 83.4%
5a6sA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.57 42.0 3.45e-01 78.0% 99.5%
3k59A02 3.30.70.2250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › B family DNA polymerase, N domain, alpha/beta motif 0.57 31.0 3.65e-01 73.0% 77.6%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 35.0 3.74e-01 74.0% 76.4%
1g3pA02 3.90.450.1 Alpha Beta › Alpha-Beta Complex › Minor Coat Protein; domain 2 › Minor Coat Protein; Domain 2 0.53 33.0 3.35e-01 78.0% 60.6%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 34.0 3.56e-01 75.0% 72.0%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 30.0 3.42e-01 75.0% 77.0%
4dn9B00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 31.0 3.20e-01 75.0% 60.8%
2w8eA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.52 36.0 2.87e-01 73.0% 56.7%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 30.0 3.13e-01 75.0% 61.8%
3ewgA00 3.30.70.940 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain 0.51 29.0 3.22e-01 72.0% 68.8%
2nrqA00 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.51 33.0 3.03e-01 76.0% 46.7%
2pd1A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 33.0 3.47e-01 75.0% 71.6%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947062 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 52.0 5.39e-01 76.0% 69.5%
4997255 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 51.0 5.10e-01 76.0% 67.0%
5046134 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 49.0 4.32e-01 76.0% 44.8%
5003912 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 53.0 4.46e-01 77.0% 56.9%
4966558 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 46.0 4.89e-01 76.0% 76.5%
4970516 2003.6.1.0 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like 0.70 54.0 4.72e-01 79.0% 62.1%
3935690 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.68 51.0 4.67e-01 79.0% 72.3%
4508433 314.1.1.3 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2d 0.68 43.0 2.91e-01 74.0% 17.1%
3334401 101.1.2.566 alpha arrays › HTH › HTH › winged helix domain › CDT1, CDT1_C 0.67 50.0 3.62e-01 78.0% 33.5%
3933222 101.1.2.111 alpha arrays › HTH › HTH › winged helix domain › RQC 0.65 49.0 4.21e-01 79.0% 59.4%
3730463 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 46.0 4.23e-01 77.0% 70.8%
4277614 242.1.1.5 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › WhiA_N 0.62 36.0 3.55e-01 75.0% 52.7%
5023262 327.11.2.82 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.60 33.0 3.91e-01 72.0% 81.5%
3978692 101.1.9.143 alpha arrays › HTH › HTH › Putative DNA-binding domain › Virulence_RhuM 0.58 43.0 3.75e-01 78.0% 63.3%
223879 223.1.1.36 a+b three layers › Profilin-like › sensor domains › sensor domains › MLTR_LBD 0.57 41.0 3.32e-01 75.0% 80.6%
3306699 101.1.2.517 alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9, POLR3C_WHD 0.55 46.0 3.14e-01 99.0% 24.0%
4223968 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.55 29.0 3.20e-01 75.0% 61.3%
4643976 101.1.2.654 alpha arrays › HTH › HTH › winged helix domain › RPA 0.55 40.0 3.42e-01 77.0% 55.2%
5054484 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.54 28.0 3.27e-01 70.0% 70.0%
4044550 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.52 28.0 3.10e-01 75.0% 62.5%
3965385 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.52 30.0 3.43e-01 75.0% 78.6%
4413612 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 34.0 3.22e-01 76.0% 54.2%
3941757 101.1.9.32 alpha arrays › HTH › HTH › Putative DNA-binding domain › ANT 0.52 38.0 3.52e-01 77.0% 63.1%
3500427 3914.1.1.2 alpha bundles › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › TMEM16 lipid scramblase transmembrane domain › Anoctamin,Anoct_dimer 0.51 39.0 2.29e-01 80.0% 15.2%
4953653 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.51 29.0 3.30e-01 74.0% 73.3%
3238186 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.51 35.0 2.46e-01 71.0% 100.0%
3018456 223.1.1.13 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 0.51 35.0 3.10e-01 73.0% 65.6%