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IMGVR_UViG_3300028591_000123-3300028591-Ga0247611_10000245135

Arc-Vir

IMGVR_UViG_3300028591_000123-3300028591-Ga0247611_10000245135

Identity

Kingdom:
archaea

Quality

52.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-95
PDB
D2 high residues 133-191
PDB
D3 high residues 210-369
PDB
Domain cluster: rep: KC292026__AGM11576.1__HGTV1-279__00246__D39-223
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17338.9 best GP88 32.9 8.50e-08 97.5% 45.0%
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r30A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.65 56.0 4.44e-01 96.9% 47.1%
2p9bA03 3.40.50.10910 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Amidohydrolase 0.63 47.0 5.19e-01 93.8% 97.6%
4ycsA00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 39.0 4.42e-01 88.7% 87.0%
1vizA00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.58 50.0 4.42e-01 99.4% 64.4%
4jejA00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.57 48.0 4.19e-01 97.5% 59.8%
4x7rA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.57 50.0 4.65e-01 96.2% 87.7%
3fndA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 51.0 4.31e-01 99.4% 73.8%
4l6wB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.56 43.0 4.23e-01 100.0% 74.7%
3e2vB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 51.0 3.91e-01 100.0% 64.4%
3vk5B00 3.20.20.390 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › FMN-linked oxidoreductases 0.55 50.0 4.29e-01 97.5% 67.5%
2ihtA02 3.40.50.1220 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › TPP-binding domain 0.55 42.0 4.24e-01 90.6% 78.0%
3umoA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.55 49.0 3.94e-01 96.2% 71.5%
3mc3A00 3.40.1260.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like 0.55 36.0 4.07e-01 89.4% 86.8%
1on3B01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.55 47.0 4.04e-01 91.9% 81.9%
3l23A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.55 50.0 4.11e-01 99.4% 74.5%
3ot4A00 3.40.50.850 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like 0.54 45.0 4.20e-01 88.1% 90.4%
4wzzA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 44.0 4.49e-01 96.9% 90.6%
2nv9D02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.52 45.0 3.99e-01 92.5% 70.5%
1fjhA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 46.0 4.03e-01 96.2% 92.8%
3qfeB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 46.0 3.71e-01 97.5% 74.5%
2f9iD00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.50 46.0 3.93e-01 100.0% 72.9%
1q6oB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.50 44.0 3.97e-01 100.0% 70.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4991251 2002.1.1.453 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GP88 0.76 72.0 5.78e-01 100.0% 56.8%
5031416 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.61 56.0 4.87e-01 100.0% 71.8%
4934255 2007.1.11.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › L-fucose isomerase, N-terminal and second domains 0.58 48.0 4.82e-01 86.9% 87.5%
3954215 2002.1.1.41 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase 0.57 51.0 3.91e-01 96.9% 51.8%
4027550 2003.6.1.2 ↗ a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Carb_kinase 0.56 51.0 3.90e-01 98.1% 56.7%
3266104 2002.1.1.30 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.56 51.0 3.95e-01 99.4% 54.5%
3924011 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.54 45.0 4.10e-01 90.6% 88.1%
3448762 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.53 40.0 4.40e-01 90.6% 99.2%
3939043 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.53 44.0 3.98e-01 89.4% 74.1%
140456 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.52 47.0 3.90e-01 99.4% 71.0%
3265175 109.1.1.1 ↗ alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C 0.51 42.0 4.15e-01 86.9% 90.6%
4185698 2486.1.1.0 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase 0.51 47.0 4.05e-01 100.0% 75.6%
5073607 2002.1.1.100 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ComA 0.51 47.0 3.97e-01 100.0% 67.9%
4414172 2486.1.1.3 ↗ a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.51 46.0 3.91e-01 100.0% 70.0%
3977807 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.51 45.0 4.32e-01 100.0% 84.2%