Back to structures

IMGVR_UViG_3300028591_000123-3300028591-Ga0247611_1000024541

Arc-Vir

IMGVR_UViG_3300028591_000123-3300028591-Ga0247611_1000024541

Quality

76.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 78-146
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 67.0 5.65e-01 100.0% 56.8%
3k59A01 2.40.50.590 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel 0.71 39.0 3.67e-01 71.0% 42.4%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.69 50.0 4.09e-01 100.0% 42.4%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.67 43.0 3.00e-01 87.0% 20.4%
4dduA07 2.60.510.20 Mainly Beta › Sandwich › EV matrix protein fold › 0.66 47.0 4.01e-01 73.9% 56.1%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 47.0 4.83e-01 88.4% 78.8%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 45.0 4.67e-01 87.0% 76.9%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.65 53.0 4.67e-01 98.6% 59.8%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.64 51.0 4.80e-01 98.6% 70.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 46.0 4.76e-01 88.4% 82.5%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 54.0 4.02e-01 100.0% 37.8%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 36.0 3.15e-01 71.0% 35.1%
2i9wA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 3.89e-01 94.2% 50.6%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 45.0 4.59e-01 87.0% 78.3%
7z0sE01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.60 42.0 3.61e-01 82.6% 42.9%
3wa2X01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 52.0 4.88e-01 100.0% 82.8%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.60 43.0 3.39e-01 82.6% 34.4%
3uk2A02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.60 51.0 4.47e-01 97.1% 63.1%
2krtA01 3.10.450.270 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 51.0 4.54e-01 100.0% 66.0%
2nwiB00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.59 51.0 4.02e-01 100.0% 96.7%
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 51.0 3.25e-01 97.1% 24.2%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.59 43.0 3.82e-01 79.7% 60.6%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.58 38.0 4.40e-01 79.7% 97.9%
1n2bB02 3.30.1300.10 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain 0.58 47.0 4.12e-01 98.6% 59.6%
7z7vC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 45.0 3.78e-01 87.0% 49.6%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.57 45.0 3.75e-01 94.2% 48.0%
6p3qA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 49.0 3.87e-01 100.0% 74.1%
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.57 36.0 3.60e-01 89.9% 60.6%
2kt4B01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 45.0 3.64e-01 100.0% 43.0%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.56 42.0 4.08e-01 85.5% 71.6%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 49.0 4.32e-01 100.0% 84.6%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.73e-01 91.3% 74.2%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 39.0 4.26e-01 82.6% 96.3%
2kjkA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 41.0 3.60e-01 79.7% 66.0%
1ugiD00 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.54 40.0 3.84e-01 82.6% 69.5%
1qmiA02 3.30.360.20 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › RNA 3'-terminal phosphate cyclase, insert domain 0.54 39.0 3.68e-01 100.0% 60.4%
4kt3B00 3.10.450.170 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › type vi secretion system effector-immunity co pseudomonas protegens 0.53 44.0 3.66e-01 94.2% 51.6%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 44.0 3.79e-01 100.0% 82.4%
2zf3C00 2.50.20.30 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.53 45.0 3.35e-01 97.1% 50.0%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.72e-01 100.0% 85.0%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.52 35.0 2.67e-01 89.9% 28.9%
2zgiA01 3.30.470.10 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain 0.52 42.0 3.88e-01 100.0% 67.7%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 42.0 3.93e-01 100.0% 91.4%
3vynA01 2.60.40.3780 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 42.0 3.89e-01 92.8% 79.3%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4679671 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.76 60.0 4.95e-01 84.1% 50.8%
3963149 330.6.1.0 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain 0.75 52.0 4.35e-01 84.1% 43.5%
4958928 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.68 58.0 4.88e-01 94.2% 91.3%
4886499 2005.1.1.21 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Pantoate_ligase 0.67 57.0 4.83e-01 94.2% 57.3%
4144660 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.67 57.0 4.83e-01 94.2% 57.3%
4032717 243.3.1.3 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.67 52.0 5.13e-01 100.0% 80.8%
4204257 243.1.1.7 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › MecA_N 0.67 59.0 4.80e-01 100.0% 69.2%
4321871 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.67 57.0 4.98e-01 98.6% 68.2%
4266048 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.66 57.0 4.97e-01 100.0% 62.9%
3963036 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.65 55.0 4.98e-01 100.0% 68.0%
3596461 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.64 57.0 4.15e-01 100.0% 59.6%
4000387 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 3.33e-01 75.4% 40.0%
4937410 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.64 54.0 4.96e-01 98.6% 76.8%
4313210 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.63 52.0 4.55e-01 94.2% 60.0%
4411834 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.62 56.0 4.82e-01 100.0% 63.9%
3670792 243.3.1.67 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Phytochelatin_C 0.62 48.0 4.97e-01 85.5% 96.9%
4111775 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.62 54.0 4.72e-01 100.0% 63.8%
3598074 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 40.0 3.42e-01 71.0% 42.9%
4087511 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 43.0 3.69e-01 73.9% 58.2%
3423601 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.61 39.0 3.29e-01 94.2% 37.5%
5079018 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 50.0 4.71e-01 92.8% 82.4%
3210879 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.61 40.0 4.49e-01 72.5% 92.0%
3994977 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 53.0 3.45e-01 100.0% 26.1%
4275948 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.60 47.0 3.90e-01 82.6% 56.7%
3503091 11.1.1.667 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TRAPPC13_N 0.60 53.0 4.46e-01 100.0% 80.8%
5045089 330.2.1.5 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 0.59 50.0 4.56e-01 100.0% 73.0%
4156336 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.59 53.0 4.31e-01 100.0% 79.2%
3575427 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.59 42.0 3.45e-01 76.8% 45.2%
5028953 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.59 51.0 4.68e-01 98.6% 77.8%
4997648 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.59 37.0 4.16e-01 79.7% 88.0%
4201236 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.58 45.0 3.45e-01 87.0% 35.3%
3961321 223.3.1.2 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S11 0.58 43.0 3.70e-01 91.3% 50.0%
4600928 4272.1.1.0 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like 0.58 45.0 3.48e-01 87.0% 37.1%
4215842 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.58 45.0 3.34e-01 87.0% 32.3%
3829702 243.3.1.26 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › protein_MS5 0.57 50.0 4.76e-01 95.7% 91.3%
3510700 330.1.1.1 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 41.0 3.68e-01 76.8% 70.0%
4641929 4272.1.1.1 a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.57 43.0 3.66e-01 87.0% 47.2%
4936452 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.56 49.0 4.21e-01 100.0% 80.0%
5029226 375.1.1.21 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.56 38.0 4.12e-01 98.6% 90.9%
3701622 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 39.0 3.17e-01 76.8% 46.7%
3861070 4292.2.1.2 a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain › KIF1B 0.55 46.0 4.02e-01 100.0% 60.9%
5004709 11.1.1.103 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.55 49.0 4.25e-01 100.0% 80.0%
3597835 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 42.0 3.14e-01 82.6% 48.2%
3736088 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.89e-01 91.3% 66.7%
3520889 243.9.1.2 a+b two layers › Cystatin-like › Nuclease A inhibitor (NuiA)-related › Nuclease A inhibitor (NuiA)-related › Maf1 0.54 44.0 3.67e-01 95.7% 74.8%
4014751 11.1.1.962 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7077 0.54 48.0 3.99e-01 100.0% 90.0%
5043504 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 36.0 3.98e-01 89.9% 96.0%
3401140 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.53 45.0 2.78e-01 97.1% 24.7%
3635518 11.1.1.962 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7077 0.52 46.0 3.87e-01 100.0% 91.7%
3232364 3335.1.1.0 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.52 42.0 4.33e-01 89.9% 95.4%
4013325 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.52 44.0 3.74e-01 100.0% 62.4%
3693121 375.1.1.26 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.52 38.0 3.30e-01 78.3% 54.5%
3305964 246.3.1.4 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos2 0.52 42.0 2.91e-01 98.6% 32.5%
5064714 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.61e-01 100.0% 71.1%
3259216 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.23e-01 100.0% 63.9%
5018204 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.51 41.0 3.23e-01 92.8% 59.4%
5057515 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 35.0 3.65e-01 89.9% 83.3%
4029974 1.1.8.11 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.51 37.0 3.37e-01 78.3% 64.9%
4941649 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 38.0 3.48e-01 82.6% 60.0%
3643058 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 41.0 3.02e-01 95.7% 42.1%