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IMGVR_UViG_3300028591_000123-3300028591-Ga0247611_1000024559

Arc-Vir

IMGVR_UViG_3300028591_000123-3300028591-Ga0247611_1000024559

Identity

Kingdom:
archaea

Quality

51.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-103
PDB
Domain cluster: representative
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.83 63.0 5.10e-01 91.8% 44.8%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.80 67.0 5.41e-01 88.8% 49.1%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.76 60.0 5.79e-01 98.0% 73.9%
3cddA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.76 66.0 5.22e-01 91.8% 51.1%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.74 66.0 5.53e-01 96.9% 80.1%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.74 66.0 5.55e-01 96.9% 80.6%
1rz1A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 65.0 5.61e-01 96.9% 80.9%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 65.0 5.55e-01 96.9% 80.0%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.73 65.0 5.29e-01 96.9% 69.8%
1uscA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 64.0 5.25e-01 96.9% 70.2%
2qckA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 64.0 5.54e-01 96.9% 82.1%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 62.0 5.57e-01 93.9% 92.7%
8ct0B01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 65.0 5.37e-01 96.9% 77.1%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 64.0 5.41e-01 96.9% 77.0%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 65.0 5.57e-01 96.9% 81.9%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 64.0 5.47e-01 96.9% 80.8%
2r6vA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 65.0 5.40e-01 98.0% 79.3%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.72 64.0 5.50e-01 96.9% 78.5%
3bnkA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.71 63.0 5.08e-01 96.9% 68.8%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.70 62.0 5.23e-01 96.9% 80.1%
2nwaA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.69 46.0 5.15e-01 84.7% 89.3%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.69 51.0 5.24e-01 79.6% 81.7%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.65 54.0 5.04e-01 98.0% 73.0%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.64 50.0 4.91e-01 99.0% 77.1%
4g59C01 2.60.40.2920 Mainly Beta › Sandwich › Immunoglobulin-like › 0.63 46.0 4.56e-01 91.8% 72.8%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 42.0 4.07e-01 91.8% 64.2%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 41.0 4.06e-01 75.5% 66.3%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 47.0 4.35e-01 83.7% 68.8%
4cvuA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 44.0 4.11e-01 76.5% 64.7%
1e62A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.59 46.0 4.21e-01 82.7% 70.3%
1jeyB02 2.40.290.10 Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › 0.59 51.0 4.13e-01 100.0% 92.0%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.90e-01 75.5% 69.5%
2wngA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.98e-01 74.5% 74.7%
5f7uA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 4.09e-01 77.6% 73.9%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.57 46.0 4.63e-01 99.0% 85.7%
4czuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 42.0 4.35e-01 95.9% 82.6%
4myjA05 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 41.0 4.33e-01 94.9% 85.2%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.94e-01 77.6% 67.0%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 4.09e-01 77.6% 89.2%
2xcmC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 4.47e-01 91.8% 88.0%
2acxA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 4.23e-01 96.9% 84.6%
5gxuB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 38.0 3.60e-01 82.7% 59.0%
3w1zC00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 4.10e-01 92.9% 90.0%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 37.0 3.84e-01 74.5% 100.0%
1shsA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 4.18e-01 91.8% 88.7%
3bvxA05 2.60.40.1360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 4.25e-01 87.8% 100.0%
3k25A00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.50 44.0 3.22e-01 100.0% 80.9%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5041372 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.86 74.0 7.77e-01 90.8% 98.9%
4602833 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.84 72.0 6.35e-01 90.8% 93.3%
3943172 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.83 72.0 7.19e-01 91.8% 96.0%
4141852 1.1.13.56 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › YQBQ 0.82 68.0 7.32e-01 87.8% 100.0%
3964308 1.1.13.37 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2163 0.81 69.0 6.10e-01 89.8% 93.3%
184471 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.81 67.0 7.13e-01 88.8% 100.0%
4995815 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.80 71.0 6.52e-01 95.9% 80.0%
184486 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.79 62.0 6.81e-01 91.8% 100.0%
3966429 1.1.13.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.76 63.0 6.56e-01 87.8% 100.0%
77 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.76 60.0 5.81e-01 98.0% 74.5%
1178487 1.1.13.26 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › GpP-like_1st 0.76 66.0 6.66e-01 91.8% 100.0%
4500974 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.75 60.0 5.62e-01 98.0% 69.2%
4214150 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.74 55.0 5.27e-01 98.0% 69.1%
4234915 1.1.5.26 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN 0.74 61.0 5.78e-01 98.0% 75.7%
3267872 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 57.0 5.12e-01 82.7% 72.3%
3741921 1.1.7.81 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › SEN1_barrel 0.72 57.0 5.61e-01 84.7% 81.0%
3288253 1.1.13.55 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF4873 0.70 55.0 5.73e-01 96.9% 92.2%
192 1.1.9.13 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF2584 0.69 46.0 5.05e-01 84.7% 84.8%
4138832 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 43.0 4.52e-01 96.9% 75.3%
4500602 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 42.0 4.32e-01 96.9% 70.5%
5020903 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 45.0 4.68e-01 77.6% 91.1%
3971176 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.60 54.0 4.45e-01 98.0% 82.3%
3744400 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.60 52.0 3.74e-01 98.0% 60.1%
5049530 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.60 44.0 4.62e-01 76.5% 90.0%
5051740 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.60 45.0 4.57e-01 77.6% 87.2%
3959921 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 35.0 3.93e-01 81.6% 73.4%
3614925 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.60 52.0 3.72e-01 100.0% 58.7%
3221539 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.60 50.0 3.62e-01 91.8% 40.5%
5020520 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.60 44.0 4.58e-01 76.5% 86.7%
4373808 1.11.1.1 ↗ beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.59 48.0 4.68e-01 90.8% 79.1%
4947901 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.59 44.0 4.58e-01 78.6% 89.2%
3275277 60.1.2.2 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku,Ku_C 0.59 51.0 3.66e-01 100.0% 59.4%
3478986 60.1.2.0 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain 0.58 50.0 3.54e-01 99.0% 57.3%
4943092 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.56 43.0 3.86e-01 81.6% 77.8%
150680 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 48.0 4.54e-01 93.9% 91.5%
3594165 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.54 43.0 3.70e-01 94.9% 51.2%
5036266 5.1.2.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.54 40.0 2.75e-01 77.6% 93.5%
3264091 11.1.1.1038 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › SIBA-E_N, Ig_SIBA-E_2nd 0.53 40.0 3.14e-01 91.8% 35.1%
4928475 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.53 47.0 4.46e-01 96.9% 100.0%
4927380 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.53 44.0 3.28e-01 92.9% 86.9%
3497709 60.1.2.1 ↗ beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku 0.52 43.0 3.18e-01 91.8% 36.8%
3659455 331.4.1.2 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › NAF 0.51 36.0 3.34e-01 73.5% 66.2%
4984287 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.51 46.0 3.84e-01 100.0% 69.4%
4962569 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 43.0 3.81e-01 93.9% 69.0%
D2 medium residues 107-179
PDB