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IMGVR_UViG_3300028601_000032-3300028601-Ga0265295_100060066

Arc-Vir

IMGVR_UViG_3300028601_000032-3300028601-Ga0265295_100060066

Identity

Kingdom:
archaea

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-109
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1odhA01 2.20.25.670 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › GCM domain, large subdomain 0.59 35.0 4.09e-01 87.6% 85.9%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 50.0 4.70e-01 94.3% 96.2%
4npsA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 29.0 3.61e-01 87.6% 87.9%
1bvsA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 34.0 3.96e-01 70.5% 100.0%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 39.0 3.50e-01 100.0% 53.0%
1bbuA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.66e-01 79.0% 84.3%
2wacA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 37.0 3.51e-01 73.3% 65.1%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.70e-01 70.5% 81.8%
5jjiE01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.48e-01 72.4% 65.5%
4wfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.45e-01 81.0% 77.1%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.51 41.0 3.40e-01 88.6% 74.9%
4u13A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 36.0 3.59e-01 96.2% 71.6%
2x9aA00 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.50 24.0 2.92e-01 71.4% 68.9%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5016329 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.59 39.0 4.48e-01 72.4% 100.0%
5001439 2.1.1.83 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SfsA_N 0.57 38.0 4.33e-01 70.5% 100.0%
1178512 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.57 45.0 4.18e-01 84.8% 91.6%
5041484 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.56 44.0 4.08e-01 84.8% 94.1%
4458321 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.56 35.0 4.14e-01 70.5% 100.0%
5051640 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.56 44.0 4.01e-01 85.7% 84.8%
3838306 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.56 44.0 3.99e-01 85.7% 86.9%
4377808 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.56 44.0 4.10e-01 85.7% 91.7%
4069150 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.55 34.0 4.08e-01 70.5% 100.0%
5020421 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.55 44.0 4.11e-01 85.7% 93.8%
5007113 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.55 44.0 4.10e-01 85.7% 92.3%
4506647 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 34.0 3.99e-01 71.4% 100.0%
4087867 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.55 34.0 4.01e-01 71.4% 100.0%
4046557 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.55 34.0 4.01e-01 70.5% 100.0%
4534526 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.54 34.0 3.96e-01 70.5% 100.0%
3969587 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.54 43.0 3.88e-01 85.7% 86.9%
4059805 2.1.1.14 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RuvA_N 0.54 34.0 3.99e-01 71.4% 100.0%
4029119 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 42.0 2.92e-01 82.9% 92.9%
4949981 2.10.1.1 ↗ beta barrels › OB-fold › CheW › CheW › CheW 0.54 46.0 4.40e-01 94.3% 94.4%
3958012 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 35.0 3.77e-01 71.4% 78.9%
3674876 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.53 40.0 3.71e-01 81.0% 86.2%
3597245 708.1.2.0 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like 0.53 46.0 3.98e-01 98.1% 85.9%
3712779 708.1.2.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › TCTP 0.53 46.0 3.99e-01 98.1% 85.9%
3283393 223.3.1.3 ↗ a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.52 45.0 3.14e-01 99.0% 86.9%
4937552 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 36.0 3.65e-01 71.4% 80.8%