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IMGVR_UViG_3300028601_000032-3300028601-Ga0265295_100060084

Arc-Vir

IMGVR_UViG_3300028601_000032-3300028601-Ga0265295_100060084

Identity

Kingdom:
archaea

Quality

88.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-29
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4v19W00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.73 51.0 3.34e-01 100.0% 16.3%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 51.0 3.99e-01 100.0% 42.7%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.69 49.0 3.68e-01 100.0% 29.6%
3hp7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 52.0 3.19e-01 100.0% 34.8%
1hnnA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.67 47.0 2.79e-01 82.8% 29.1%
2vi7A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 52.0 3.31e-01 100.0% 17.2%
2bkyX00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.66 48.0 3.78e-01 100.0% 37.2%
6qdws00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.66 45.0 3.37e-01 100.0% 24.8%
2jlmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.65 49.0 3.12e-01 100.0% 15.8%
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.63 48.0 3.02e-01 89.7% 13.3%
3qu1A00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.61 43.0 2.76e-01 75.9% 35.1%
6nvxB02 2.30.120.10 Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region 0.60 44.0 3.53e-01 96.6% 84.4%
1vhsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 39.0 2.67e-01 100.0% 16.4%
3ckjA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 41.0 2.43e-01 100.0% 63.0%
4l1nA00 2.40.128.660 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF15525, DUF4652 0.55 40.0 2.63e-01 79.3% 14.3%
3gw6A03 3.30.2460.10 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Endo-n-acetylneuraminidase domain 0.55 37.0 3.45e-01 100.0% 56.1%
3x1lB03 2.60.40.4350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 36.0 2.88e-01 100.0% 33.3%
3ne5C02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 39.0 2.99e-01 100.0% 29.4%
1novA00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 2.41e-01 100.0% 41.4%
5cvdB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 37.0 2.38e-01 93.1% 31.0%
1vq8R00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.53 36.0 2.54e-01 100.0% 24.0%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 36.0 2.05e-01 89.7% 6.2%
7trwA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 37.0 2.75e-01 72.4% 82.2%
1vwxP00 3.90.470.10 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 0.52 37.0 2.49e-01 89.7% 93.5%
2x24A03 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 37.0 2.21e-01 86.2% 16.9%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978550 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.73 58.0 3.72e-01 100.0% 18.8%
4941955 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 4.16e-01 100.0% 77.8%
3347210 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 51.0 3.83e-01 93.1% 33.0%
3731333 101.21.1.1 ↗ alpha arrays › HTH › HTH domain in DNA topoisomerase IV alpha subunit › HTH domain in DNA topoisomerase IV alpha subunit › TP6A_N 0.67 49.0 3.38e-01 100.0% 20.7%
3935753 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.67 48.0 2.96e-01 100.0% 12.3%
2471641 1.1.5.24 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 0.65 50.0 3.30e-01 100.0% 20.1%
3631673 222.1.1.27 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PF27832 0.65 46.0 3.00e-01 100.0% 15.6%
1125237 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.64 44.0 3.31e-01 100.0% 24.5%
4995209 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.64 46.0 3.03e-01 89.7% 31.0%
3270426 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.63 46.0 3.39e-01 100.0% 42.9%
4644910 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.63 43.0 3.11e-01 100.0% 22.5%
4057698 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.63 45.0 3.14e-01 100.0% 20.8%
4137758 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.63 49.0 4.38e-01 100.0% 68.0%
3685970 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.62 43.0 2.87e-01 100.0% 17.1%
3904923 2.1.1.239 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CaKB 0.62 46.0 3.26e-01 100.0% 28.0%
4067216 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.61 43.0 3.23e-01 100.0% 24.5%
4013634 218.2.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 0.61 42.0 2.78e-01 100.0% 14.7%
3600358 323.1.1.0 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.61 41.0 2.62e-01 100.0% 13.1%
3224904 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 45.0 3.24e-01 100.0% 25.2%
3962454 218.2.1.0 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 0.59 45.0 3.04e-01 100.0% 22.1%
3936762 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.59 40.0 2.53e-01 100.0% 11.2%
3924269 323.1.1.3 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 40.0 2.48e-01 100.0% 11.0%
4230774 101.1.9.117 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_assoc 0.57 47.0 3.43e-01 96.6% 31.6%
5028780 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.57 39.0 2.71e-01 100.0% 29.0%
4027530 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.57 39.0 2.65e-01 100.0% 14.7%
4029705 256.1.1.0 ↗ a+b two layers › MTH1598-like › MTH1598-like › MTH1598-like 0.57 43.0 3.79e-01 100.0% 51.7%
3272841 2006.1.1.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › NIF 0.56 41.0 2.56e-01 89.7% 22.8%
4950495 304.8.1.2 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.55 38.0 3.16e-01 96.6% 35.0%
3270055 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.55 39.0 2.69e-01 89.7% 80.0%
4286671 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.54 37.0 2.44e-01 89.7% 60.7%
4602130 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.54 36.0 2.62e-01 100.0% 30.4%
4020959 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 2.50e-01 93.1% 56.4%
4621720 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.52 39.0 2.74e-01 96.6% 85.4%
3991715 218.2.1.1 ↗ a+b two layers › Enolase-N/ribosomal protein › Ribosomal protein L22 › Ribosomal protein L22 › Ribosomal_L22 0.51 33.0 2.31e-01 100.0% 15.9%
3263391 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.51 39.0 2.76e-01 79.3% 18.2%
3919775 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 2.75e-01 100.0% 29.0%