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IMGVR_UViG_3300028601_000199-3300028601-Ga0265295_100670414

Arc-Vir

IMGVR_UViG_3300028601_000199-3300028601-Ga0265295_100670414

Quality

80.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7rpyA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 48.0 4.21e-01 92.5% 86.4%
2d40B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 41.0 2.77e-01 76.1% 38.0%
3uezC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 42.0 3.94e-01 77.6% 84.3%
4j3vA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.53e-01 76.1% 75.2%
5f1mA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 43.0 2.97e-01 85.1% 74.8%
4oi4C01 2.60.120.1030 Mainly Beta › Sandwich › Jelly Rolls › Clp1, DNA binding domain 0.56 39.0 3.67e-01 98.5% 58.3%
7xoiP01 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 41.0 3.99e-01 92.5% 71.4%
7vjvA01 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.56 44.0 3.26e-01 92.5% 85.0%
8dwoK02 2.60.40.4310 Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain B 0.55 42.0 4.31e-01 91.0% 89.1%
2pfwA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.41e-01 97.0% 46.8%
1tq5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 38.0 3.36e-01 98.5% 45.4%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 3.60e-01 83.6% 83.5%
6g4bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 42.0 3.19e-01 86.6% 51.5%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 40.0 3.32e-01 82.1% 75.8%
2i44B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 40.0 2.71e-01 85.1% 76.6%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 44.0 3.44e-01 94.0% 64.9%
3cewA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 41.0 3.59e-01 88.1% 80.9%
3njzA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 2.83e-01 95.5% 33.9%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 42.0 3.80e-01 97.0% 62.8%
2qqpA03 2.60.40.4260 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.56e-01 100.0% 94.9%
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 39.0 3.41e-01 92.5% 52.9%
2w3oB00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.52 41.0 3.67e-01 89.6% 82.2%
1o4tA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.52 43.0 3.71e-01 98.5% 96.5%
4rd7A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.38e-01 86.6% 71.4%
4h7lB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 40.0 3.38e-01 86.6% 68.4%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.67e-01 98.5% 93.0%
2wanA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 37.0 3.25e-01 76.1% 72.5%
4myjA04 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 38.0 3.20e-01 95.5% 44.2%
3k94A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.51 43.0 3.10e-01 98.5% 50.0%
3cq9A00 3.40.50.10240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin pyrophosphokinase, catalytic domain 0.51 43.0 3.12e-01 98.5% 93.1%
1m1cA00 3.90.1840.10 Alpha Beta › Alpha-Beta Complex › Major capsid protein › Major capsid protein 0.51 42.0 2.48e-01 95.5% 90.3%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 41.0 3.76e-01 94.0% 89.2%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 41.0 3.67e-01 97.0% 93.3%
2if7B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 37.0 3.47e-01 82.1% 71.3%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482975 223.2.1.7 a+b three layers › Profilin-like › profilin-like › profilin-like › SRP-alpha_N 0.65 40.0 3.31e-01 77.6% 33.6%
5036140 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.59 44.0 4.41e-01 82.1% 100.0%
3637624 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.58 46.0 3.77e-01 85.1% 75.8%
4012916 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.58 50.0 4.32e-01 98.5% 88.2%
3386919 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.58 42.0 3.68e-01 79.1% 86.4%
3786737 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.57 45.0 3.66e-01 89.6% 79.3%
3279676 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.57 41.0 3.51e-01 98.5% 45.2%
3945556 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.56 40.0 3.45e-01 97.0% 46.4%
3237494 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.56 44.0 3.61e-01 89.6% 63.7%
3688349 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.56 40.0 3.38e-01 97.0% 43.3%
3969539 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 40.0 3.51e-01 97.0% 50.0%
4023469 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.55 43.0 3.41e-01 85.1% 72.1%
3925229 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.55 43.0 3.73e-01 89.6% 76.5%
4954309 2.1.1.375 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MJ0548_C 0.55 45.0 4.26e-01 100.0% 97.8%
3631345 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.55 47.0 3.92e-01 100.0% 86.4%
3505811 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.55 44.0 3.77e-01 91.0% 76.5%
3957537 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.55 40.0 3.55e-01 100.0% 51.4%
4032200 10.12.1.63 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › MPI_cupin_dom 0.55 39.0 3.54e-01 92.5% 53.7%
1030922 10.12.1.59 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Pirin_C_2 0.55 40.0 3.67e-01 98.5% 57.4%
1731746 12.1.1.50 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd 0.55 41.0 3.87e-01 92.5% 66.3%
5035479 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 41.0 3.84e-01 85.1% 97.8%
4943677 12.1.1.119 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF5110 0.54 40.0 3.66e-01 83.6% 59.0%
3260090 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.54 42.0 3.57e-01 89.6% 72.0%
3378174 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.54 42.0 2.81e-01 85.1% 28.2%
3989031 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.54 39.0 2.63e-01 76.1% 32.4%
3177537 10.12.1.129 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C, AraC_binding 0.54 40.0 3.67e-01 83.6% 100.0%
4164755 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.54 43.0 3.10e-01 88.1% 48.7%
3652660 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.53 38.0 2.68e-01 76.1% 55.9%
167437 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.53 41.0 3.53e-01 88.1% 76.1%
1180018 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.53 40.0 3.25e-01 97.0% 41.5%
3962679 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.53 42.0 3.41e-01 98.5% 44.4%
4962143 2007.1.1.13 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Glyco_hydro_42M 0.52 35.0 2.53e-01 70.1% 24.8%
3578209 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.52 41.0 4.12e-01 97.0% 84.3%
3380103 73.1.1.0 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.52 43.0 3.86e-01 95.5% 78.0%
4073495 11.1.1.47 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.52 37.0 3.15e-01 76.1% 63.5%
3625018 73.1.1.1 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.52 40.0 3.44e-01 91.0% 73.6%
3689525 10.12.1.129 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › PMI_typeI_C, AraC_binding 0.52 41.0 3.77e-01 88.1% 83.3%
3935758 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.52 40.0 3.65e-01 86.6% 72.6%
3732359 10.12.1.8 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_binding 0.52 41.0 3.74e-01 88.1% 83.3%
4968874 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.52 43.0 3.64e-01 98.5% 76.8%
4088040 11.1.1.47 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.51 36.0 3.09e-01 76.1% 60.9%
3969412 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.51 41.0 3.53e-01 94.0% 89.6%
3177672 212.1.1.50 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › PF29116 0.51 45.0 3.32e-01 100.0% 82.3%
3554175 73.1.1.9 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA_2 0.51 39.0 3.50e-01 89.6% 79.0%
3973849 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.51 43.0 3.68e-01 98.5% 95.7%
3973477 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 40.0 3.48e-01 92.5% 89.5%
4954973 244.2.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain › FAD/NAD-linked reduatases, dimerisation (C-terminal) domain 0.50 37.0 3.87e-01 85.1% 95.0%
4963763 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 40.0 3.60e-01 92.5% 90.0%
4419958 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.50 39.0 3.28e-01 86.6% 60.8%
2834343 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.50 38.0 2.81e-01 82.1% 69.2%
D2 high residues 72-143
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ir4A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 33.0 3.23e-01 90.3% 47.4%
3ug9A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.54 38.0 2.77e-01 76.4% 46.2%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.53 37.0 3.69e-01 76.4% 70.7%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 3.35e-01 100.0% 63.4%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3480534 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 40.0 3.39e-01 72.2% 36.7%
3281471 101.1.1.42 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.63 45.0 4.43e-01 76.4% 98.8%
5015219 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 36.0 3.30e-01 83.3% 45.3%
3936306 3967.1.1.1 extended segments › Mitoribosomal protein mS26 › Mitoribosomal protein mS26 › Mitoribosomal protein mS26 › MRP-S26 0.56 30.0 2.26e-01 79.2% 21.8%
3803646 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.56 42.0 4.45e-01 83.3% 100.0%
4972692 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 36.0 3.27e-01 100.0% 46.7%
3641487 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.55 39.0 3.41e-01 76.4% 72.5%
4499722 5054.1.1.27 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › tRNA-synt_2_TM 0.55 40.0 3.68e-01 87.5% 57.9%
3647744 192.15.1.0 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains 0.55 37.0 3.19e-01 72.2% 55.2%
3270143 7579.1.1.35 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PGAP1 0.52 42.0 2.81e-01 95.8% 78.2%
3739047 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.52 33.0 3.32e-01 94.4% 62.7%
1557160 5001.1.1.6 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Bac_rhodopsin 0.51 44.0 3.00e-01 100.0% 59.5%
4237550 2004.1.1.348 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B 0.50 33.0 2.50e-01 90.3% 26.1%