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IMGVR_UViG_3300028601_000199-3300028601-Ga0265295_100670419
Arc-VirIMGVR_UViG_3300028601_000199-3300028601-Ga0265295_100670419
Identity
- Kingdom:
- archaea
Quality
80.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-167
Domain cluster:
rep: IMGVR_UViG_3300020814_000341-3300020814-Ga0214088_182449110__D102-238
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4paaA05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.75 | 37.0 | 5.02e-01 | 100.0% | 91.1% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.74 | 36.0 | 4.72e-01 | 100.0% | 82.6% |
| 3girA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.74 | 36.0 | 5.00e-01 | 100.0% | 93.6% |
| 5yppA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.65 | 32.0 | 4.01e-01 | 100.0% | 77.8% |
| 2f1fA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.64 | 32.0 | 4.27e-01 | 100.0% | 91.1% |
| 1kskA02 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.64 | 33.0 | 3.28e-01 | 100.0% | 44.9% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 32.0 | 4.10e-01 | 85.1% | 83.7% |
| 1o6eA00 | 3.20.16.10 | Alpha Beta › Alpha-Beta Barrel › Serine Protease, Human Cytomegalovirus Protease; Chain A › Herpesvirus/Caudovirus protease domain | 0.63 | 56.0 | 4.91e-01 | 100.0% | 65.3% |
| 2gmqA00 | 2.40.450.10 | Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain | 0.62 | 33.0 | 4.00e-01 | 90.3% | 78.8% |
| 2jwnA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 31.0 | 3.76e-01 | 100.0% | 73.0% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 31.0 | 3.54e-01 | 70.1% | 62.4% |
| 2w7vA00 | 3.30.1360.100 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM | 0.60 | 27.0 | 3.56e-01 | 93.5% | 75.6% |
| 6lxgA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 30.0 | 4.07e-01 | 98.7% | 97.3% |
| 1a9nD00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 32.0 | 3.89e-01 | 100.0% | 82.8% |
| 5wpjA02 | 3.30.70.420 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hydroxymethylglutaryl-CoA reductase, class I/II, NAD/NADP-binding domain | 0.59 | 39.0 | 4.52e-01 | 100.0% | 94.4% |
| 1vq8S00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 27.0 | 3.48e-01 | 90.3% | 75.3% |
| 1u8sA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 30.0 | 3.84e-01 | 100.0% | 84.9% |
| 4p6qA02 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 29.0 | 3.92e-01 | 100.0% | 93.4% |
| 1vioA03 | 3.30.70.1560 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Alpha-L RNA-binding motif | 0.59 | 30.0 | 3.91e-01 | 100.0% | 90.2% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 32.0 | 3.80e-01 | 100.0% | 79.4% |
| 5mmiU01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 27.0 | 3.47e-01 | 99.4% | 76.8% |
| 2dnmA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 30.0 | 3.55e-01 | 100.0% | 71.8% |
| 2e7vA01 | 3.30.70.960 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SEA domain | 0.58 | 37.0 | 4.31e-01 | 99.4% | 93.3% |
| 2v9kA04 | 3.30.70.3190 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 38.0 | 4.44e-01 | 99.4% | 95.4% |
| 5t9pA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 29.0 | 3.71e-01 | 100.0% | 83.1% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.56 | 31.0 | 3.86e-01 | 100.0% | 89.0% |
| 3zxaC02 | 2.60.40.3420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 26.0 | 3.11e-01 | 100.0% | 62.3% |
| 3i4hX02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 35.0 | 4.08e-01 | 100.0% | 93.3% |
| 4djbA00 | 3.30.70.2870 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 | 0.54 | 38.0 | 4.23e-01 | 100.0% | 93.2% |
| 1jmtA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 33.0 | 3.99e-01 | 100.0% | 94.9% |
| 1dj0A01 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.53 | 43.0 | 4.54e-01 | 100.0% | 97.1% |
| 2gffA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 31.0 | 3.78e-01 | 100.0% | 91.7% |
| 1lq9A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 32.0 | 3.71e-01 | 100.0% | 83.9% |
| 1vs3A02 | 3.30.70.660 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain | 0.51 | 42.0 | 4.39e-01 | 100.0% | 94.4% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4960055 | 1.1.16.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain | 0.95 | 84.0 | 8.87e-01 | 98.1% | 100.0% |
| 5003309 | 50.1.1.0 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin | 0.85 | 69.0 | 7.49e-01 | 100.0% | 100.0% |
| 3964948 | 1.1.16.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › Peptidase_S78 | 0.84 | 64.0 | 7.05e-01 | 100.0% | 96.8% |
| 3166306 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.79 | 73.0 | 7.39e-01 | 100.0% | 96.7% |
| 3945977 | 50.1.1.4 ↗ | beta barrels › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › Herpes virus serine proteinase, assemblin › DUF2213 | 0.77 | 73.0 | 7.18e-01 | 100.0% | 95.8% |
| 4123849 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.75 | 36.0 | 4.81e-01 | 100.0% | 83.5% |
| 3165956 | 2007.2.4.10 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › Mu-like_Pro | 0.74 | 64.0 | 6.77e-01 | 98.1% | 100.0% |
| 3482981 | 4956.1.1.0 ↗ | a+b two layers › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.69 | 33.0 | 4.77e-01 | 98.7% | 100.0% |
| 3275678 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.68 | 34.0 | 2.81e-01 | 100.0% | 27.0% |
| 3386025 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.67 | 43.0 | 4.52e-01 | 96.8% | 69.7% |
| 3256920 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 38.0 | 4.18e-01 | 87.0% | 70.4% |
| 3216247 | 1.1.7.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN | 0.65 | 31.0 | 3.88e-01 | 87.0% | 74.4% |
| 4952364 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.64 | 32.0 | 4.21e-01 | 87.0% | 85.9% |
| 4889080 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.64 | 41.0 | 4.41e-01 | 91.6% | 75.0% |
| 3594244 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.63 | 35.0 | 4.35e-01 | 100.0% | 85.7% |
| 4532856 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.63 | 31.0 | 3.20e-01 | 100.0% | 48.3% |
| 3231887 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.62 | 31.0 | 4.07e-01 | 100.0% | 88.7% |
| 3993329 | 1.1.8.18 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › POP1_C | 0.62 | 39.0 | 3.59e-01 | 100.0% | 48.5% |
| 3235989 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.61 | 31.0 | 2.71e-01 | 100.0% | 30.9% |
| 3247890 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.61 | 31.0 | 3.83e-01 | 100.0% | 78.9% |
| 5026237 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 33.0 | 4.20e-01 | 100.0% | 91.8% |
| 3460005 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 34.0 | 4.25e-01 | 100.0% | 94.1% |
| 3990697 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.61 | 35.0 | 4.31e-01 | 100.0% | 91.6% |
| 3219903 | 304.9.1.81 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RBD_AKAP-17A | 0.60 | 36.0 | 4.31e-01 | 100.0% | 92.6% |
| 3986531 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.60 | 43.0 | 4.49e-01 | 94.8% | 80.0% |
| 4092712 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.59 | 35.0 | 4.36e-01 | 100.0% | 94.7% |
| 4623039 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.59 | 27.0 | 3.51e-01 | 71.4% | 80.0% |
| 3965226 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.59 | 44.0 | 4.90e-01 | 97.4% | 95.2% |
| 3639905 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.59 | 34.0 | 3.82e-01 | 100.0% | 72.5% |
| 3477313 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 35.0 | 4.18e-01 | 100.0% | 92.0% |
| 3220081 | 304.102.1.7 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › Pus10_C | 0.57 | 40.0 | 3.39e-01 | 100.0% | 42.5% |
| 3777373 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.57 | 40.0 | 4.46e-01 | 100.0% | 92.5% |
| 4974179 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.57 | 35.0 | 4.06e-01 | 100.0% | 85.5% |
| 5074869 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.57 | 43.0 | 3.55e-01 | 100.0% | 44.8% |
| 4246888 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.57 | 42.0 | 3.61e-01 | 100.0% | 47.6% |
| 4948136 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.56 | 42.0 | 3.59e-01 | 100.0% | 48.6% |
| 3968189 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.56 | 43.0 | 4.73e-01 | 96.8% | 96.8% |
| 3227523 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.56 | 35.0 | 3.82e-01 | 100.0% | 74.6% |
| 3910541 | 304.47.1.1 ↗ | a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA | 0.55 | 41.0 | 4.40e-01 | 100.0% | 91.5% |
| 4479772 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.53 | 30.0 | 2.58e-01 | 100.0% | 32.2% |
| 4042102 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.53 | 43.0 | 3.72e-01 | 100.0% | 54.7% |
| 4023966 | 304.9.1.6 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 | 0.53 | 31.0 | 3.25e-01 | 100.0% | 61.4% |
| 4304256 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.53 | 43.0 | 3.71e-01 | 100.0% | 54.9% |
| 3743321 | 304.102.1.3 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_1 | 0.52 | 43.0 | 3.47e-01 | 100.0% | 44.8% |
| 3268787 | 304.116.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor › PCRF | 0.51 | 32.0 | 3.67e-01 | 100.0% | 86.4% |
| 3672118 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.50 | 33.0 | 3.76e-01 | 100.0% | 88.7% |
| 4884496 | 304.116.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in release factor › Ferredoxin-like domain in release factor | 0.50 | 32.0 | 3.80e-01 | 100.0% | 97.1% |
D2
medium
residues 206-273
Domain cluster:
representative
D3
medium
residues 274-312_330-354