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IMGVR_UViG_3300028601_000199-3300028601-Ga0265295_10067045
Arc-VirIMGVR_UViG_3300028601_000199-3300028601-Ga0265295_10067045
Identity
- Kingdom:
- archaea
Quality
73.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-94
Domain cluster:
rep: NC_031039.1__YP_009282975.1__BI022_gp070__00070__D20-87
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3egrA00 | 3.10.20.520 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B | 0.72 | 46.0 | 4.98e-01 | 100.0% | 77.8% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.72 | 46.0 | 3.93e-01 | 100.0% | 40.8% |
| 4d7pA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.68 | 46.0 | 4.28e-01 | 100.0% | 55.2% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.67 | 42.0 | 3.46e-01 | 100.0% | 35.0% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.67 | 42.0 | 4.96e-01 | 96.1% | 98.0% |
| 3utoB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 38.0 | 3.53e-01 | 100.0% | 42.0% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.66 | 41.0 | 4.79e-01 | 94.7% | 96.0% |
| 1m0wA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.63 | 38.0 | 3.39e-01 | 100.0% | 42.6% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.63 | 44.0 | 4.41e-01 | 100.0% | 72.4% |
| 1tvgA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.63 | 42.0 | 3.50e-01 | 100.0% | 39.0% |
| 1wkyA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.62 | 42.0 | 3.48e-01 | 100.0% | 37.5% |
| 1y6kR01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 40.0 | 3.69e-01 | 100.0% | 50.0% |
| 2mv2A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.61 | 39.0 | 3.17e-01 | 100.0% | 33.1% |
| 5cw3C01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 44.0 | 3.59e-01 | 100.0% | 40.1% |
| 2pqqA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 37.0 | 2.98e-01 | 100.0% | 32.0% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.61 | 41.0 | 4.71e-01 | 96.1% | 98.2% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.60 | 41.0 | 3.25e-01 | 100.0% | 34.9% |
| 2qyxA02 | 3.30.70.1360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like | 0.59 | 38.0 | 3.36e-01 | 100.0% | 43.4% |
| 2qcsB02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 36.0 | 3.08e-01 | 100.0% | 38.4% |
| 3og6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 37.0 | 3.38e-01 | 100.0% | 48.5% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 37.0 | 3.07e-01 | 100.0% | 38.0% |
| 4ev0D01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 35.0 | 2.89e-01 | 100.0% | 34.3% |
| 4d10F01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.57 | 43.0 | 3.33e-01 | 100.0% | 35.2% |
| 1wscA01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.56 | 43.0 | 3.57e-01 | 100.0% | 44.3% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.55 | 37.0 | 3.29e-01 | 100.0% | 45.1% |
| 6j7cA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.53 | 40.0 | 3.18e-01 | 94.7% | 37.3% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.53 | 47.0 | 4.57e-01 | 100.0% | 94.0% |
| 8bs9A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 47.0 | 3.12e-01 | 100.0% | 25.0% |
| 5cvmA00 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 46.0 | 3.09e-01 | 100.0% | 24.4% |
| 6p58A00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.52 | 34.0 | 2.82e-01 | 88.2% | 33.3% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 37.0 | 3.04e-01 | 98.7% | 37.8% |
| 3orqA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 41.0 | 3.02e-01 | 88.2% | 53.1% |
| 6hjfA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.51 | 39.0 | 3.05e-01 | 94.7% | 35.8% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 41.0 | 3.11e-01 | 88.2% | 59.1% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.51 | 34.0 | 3.29e-01 | 98.7% | 57.6% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 36.0 | 3.06e-01 | 98.7% | 42.3% |
| 5axgA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 33.0 | 2.89e-01 | 100.0% | 40.5% |
| 7nitA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.65e-01 | 100.0% | 60.9% |
| 3sonA00 | 3.90.79.10 | Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase | 0.50 | 36.0 | 3.06e-01 | 80.3% | 79.5% |
| 4e4tA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.50 | 39.0 | 2.97e-01 | 88.2% | 56.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4161260 | 7056.1.1.3 ↗ | few secondary structure elements › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zinc binding domain of metalloprotease Spartan › Zn_ribbon_SprT | 0.79 | 46.0 | 5.84e-01 | 98.7% | 100.0% |
| 4964337 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.68 | 44.0 | 4.89e-01 | 98.7% | 90.9% |
| 4965895 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.67 | 44.0 | 4.07e-01 | 100.0% | 52.0% |
| 3691249 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.66 | 43.0 | 3.66e-01 | 100.0% | 40.0% |
| 3505298 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.64 | 44.0 | 4.66e-01 | 100.0% | 83.1% |
| 4330212 | 302.4.1.0 ↗ | a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit | 0.64 | 45.0 | 3.93e-01 | 100.0% | 48.7% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 45.0 | 4.98e-01 | 100.0% | 93.2% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.64 | 44.0 | 4.93e-01 | 100.0% | 91.7% |
| 3392605 | 2492.1.1.49 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › PF26560 | 0.63 | 44.0 | 3.70e-01 | 100.0% | 43.1% |
| 4962335 | 3115.5.1.1 ↗ | a+b two layers › GP2-like › phenylacetate-CoA oxygenase subunit PaaB › phenylacetate-CoA oxygenase subunit PaaB › PaaB | 0.62 | 41.0 | 4.37e-01 | 98.7% | 80.0% |
| 3508967 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.62 | 41.0 | 3.71e-01 | 100.0% | 48.2% |
| 3934346 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 42.0 | 3.74e-01 | 100.0% | 49.1% |
| 4121299 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.61 | 43.0 | 3.11e-01 | 100.0% | 24.2% |
| 3210904 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.58 | 40.0 | 3.39e-01 | 100.0% | 40.7% |
| 3510040 | 3115.3.1.2 ↗ | a+b two layers › GP2-like › P56 › P56 › DUF2922 | 0.58 | 44.0 | 4.41e-01 | 100.0% | 80.0% |
| 3274364 | 560.1.1.0 ↗ | few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain | 0.57 | 33.0 | 3.89e-01 | 100.0% | 87.8% |
| 3487424 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.57 | 39.0 | 2.99e-01 | 100.0% | 32.7% |
| 3725441 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 41.0 | 4.52e-01 | 94.7% | 100.0% |
| 3622256 | 219.1.1.3 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH | 0.56 | 39.0 | 3.17e-01 | 100.0% | 36.1% |
| 1688016 | 220.3.1.3 ↗ | beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 | 0.56 | 48.0 | 3.59e-01 | 100.0% | 51.4% |
| 3836184 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.55 | 42.0 | 3.38e-01 | 100.0% | 41.3% |
| 5038720 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 38.0 | 3.33e-01 | 100.0% | 46.7% |
| 3169052 | 3561.1.1.1 ↗ | a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 | 0.54 | 31.0 | 1.92e-01 | 86.8% | 8.7% |
| 3332191 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 34.0 | 2.68e-01 | 75.0% | 26.5% |
| 3971649 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 37.0 | 2.87e-01 | 82.9% | 30.3% |
| 3250180 | 223.3.1.6 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 | 0.53 | 37.0 | 2.90e-01 | 73.7% | 81.2% |
| 142848 | 11.1.1.32 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Desulfoferrodox | 0.53 | 41.0 | 3.45e-01 | 100.0% | 48.9% |
| 5052820 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 40.0 | 3.06e-01 | 81.6% | 69.5% |
| 4960810 | 3352.1.1.51 ↗ | alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › AglB_core-like | 0.53 | 38.0 | 2.22e-01 | 100.0% | 7.5% |
| 3391637 | 223.1.1.77 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Intu_longin_3 | 0.52 | 36.0 | 3.29e-01 | 89.5% | 52.4% |
| 3591100 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.51 | 40.0 | 2.67e-01 | 89.5% | 93.3% |
| 3968768 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.51 | 42.0 | 4.29e-01 | 100.0% | 94.7% |
| 3643787 | 5.1.3.142 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like | 0.51 | 37.0 | 2.45e-01 | 78.9% | 19.2% |
| 5051461 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.50 | 38.0 | 3.02e-01 | 84.2% | 44.7% |