Back to structures

IMGVR_UViG_3300028601_000785-3300028601-Ga0265295_100223616

Arc-Vir

IMGVR_UViG_3300028601_000785-3300028601-Ga0265295_100223616

Quality

78.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-96
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.73 44.0 3.87e-01 71.6% 41.4%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 43.0 4.30e-01 85.3% 58.9%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 4.96e-01 85.3% 76.8%
2ma3A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 4.89e-01 85.3% 73.9%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 42.0 4.35e-01 94.7% 64.4%
2fnaA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 45.0 4.98e-01 100.0% 86.3%
2pjpA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 42.0 4.99e-01 100.0% 96.7%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.60e-01 86.3% 68.4%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 40.0 3.65e-01 85.3% 44.4%
1lvaA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 41.0 4.96e-01 100.0% 98.3%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 43.0 4.98e-01 97.9% 95.4%
1sd4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 43.0 5.06e-01 100.0% 98.4%
2g9wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 42.0 4.78e-01 85.3% 92.5%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 39.0 3.58e-01 86.3% 44.2%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 43.0 4.65e-01 100.0% 83.1%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 42.0 4.33e-01 85.3% 69.6%
1yg2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 41.0 4.43e-01 84.2% 78.5%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 39.0 3.59e-01 85.3% 45.7%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 41.0 4.38e-01 100.0% 77.8%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 40.0 4.54e-01 87.4% 89.7%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 38.0 4.02e-01 100.0% 68.6%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 40.0 4.17e-01 100.0% 70.8%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 41.0 4.45e-01 85.3% 82.5%
3mczA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 39.0 4.13e-01 100.0% 74.4%
3dp7B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 4.10e-01 100.0% 69.9%
3b02A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 42.0 4.38e-01 85.3% 81.2%
1o3sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.74e-01 85.3% 100.0%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 4.29e-01 85.3% 75.5%
3go5A04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 38.0 4.49e-01 100.0% 100.0%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 41.0 4.33e-01 85.3% 82.1%
1zybA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.58 39.0 2.99e-01 86.3% 29.1%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.12e-01 100.0% 71.3%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 40.0 4.30e-01 85.3% 85.2%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 41.0 4.36e-01 100.0% 86.6%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 42.0 4.43e-01 94.7% 86.0%
1wjuA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 38.0 3.81e-01 74.7% 66.0%
2l2nA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 37.0 4.15e-01 70.5% 90.1%
3d0sA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 4.18e-01 85.3% 86.3%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 4.09e-01 100.0% 88.5%
2nwvA00 3.30.310.110 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › XisI-like 0.54 40.0 3.84e-01 97.9% 66.1%
2kvoA01 2.40.30.220 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 0.54 39.0 3.82e-01 75.8% 97.1%
2gcuA01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.54 41.0 3.13e-01 82.1% 85.7%
1q48A00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.54 43.0 3.94e-01 90.5% 68.7%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.53 43.0 3.51e-01 89.5% 66.1%
4e5xG00 2.60.40.3530 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 4.23e-01 89.5% 92.9%
2bwqA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 42.0 3.87e-01 87.4% 90.2%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.72e-01 87.4% 65.6%
3ec8A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 36.0 3.23e-01 74.7% 52.5%
3tekA00 3.30.470.50 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.51 35.0 3.19e-01 72.6% 95.7%
1lwrA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 41.0 4.18e-01 90.5% 97.9%
ECOD (69)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018179 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 54.0 6.46e-01 100.0% 98.5%
4965236 101.1.2.952 alpha arrays › HTH › HTH › winged helix domain › PF29290 0.80 50.0 6.13e-01 100.0% 100.0%
5010323 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 47.0 5.82e-01 84.2% 96.7%
5022793 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 48.0 5.94e-01 98.9% 100.0%
5000849 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 48.0 5.51e-01 100.0% 85.7%
4031683 101.1.2.478 alpha arrays › HTH › HTH › winged helix domain › ssDNA-exonuc_C 0.73 44.0 5.36e-01 84.2% 96.7%
3827309 244.3.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU 0.72 53.0 5.43e-01 76.8% 100.0%
4991763 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 46.0 5.33e-01 83.2% 90.0%
3741065 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 49.0 4.90e-01 100.0% 70.5%
3183463 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.70 50.0 4.77e-01 73.7% 69.1%
5031401 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 48.0 5.19e-01 98.9% 83.7%
4929222 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 5.67e-01 100.0% 100.0%
4601931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 45.0 4.49e-01 87.4% 63.0%
4010642 101.1.2.6 alpha arrays › HTH › HTH › winged helix domain › GntR 0.69 45.0 5.12e-01 100.0% 90.0%
4952882 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 48.0 5.24e-01 100.0% 86.3%
4946699 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 45.0 4.64e-01 100.0% 70.8%
2686 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 42.0 4.35e-01 94.7% 64.4%
5058140 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 43.0 4.28e-01 85.3% 60.0%
5021859 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.69 40.0 4.70e-01 84.2% 84.6%
3979470 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.69 42.0 4.57e-01 87.4% 73.8%
4948727 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.68 40.0 4.50e-01 85.3% 77.1%
4997341 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 42.0 4.87e-01 100.0% 90.8%
4988663 101.1.2.30 alpha arrays › HTH › HTH › winged helix domain › TrmB 0.67 40.0 4.24e-01 85.3% 65.9%
4941114 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.67 43.0 4.61e-01 98.9% 76.2%
5000830 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 45.0 4.67e-01 88.4% 73.3%
4992297 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 39.0 3.26e-01 85.3% 33.3%
4966661 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.66 40.0 4.29e-01 85.3% 70.9%
3589215 101.1.2.89 alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR 0.66 38.0 4.82e-01 100.0% 100.0%
5032748 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.66 39.0 4.27e-01 85.3% 73.3%
4210864 101.1.2.808 alpha arrays › HTH › HTH › winged helix domain › PF30520 0.65 41.0 4.86e-01 98.9% 100.0%
298007 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.65 41.0 4.54e-01 100.0% 83.3%
4964118 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.64 38.0 3.74e-01 84.2% 54.0%
4956598 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 38.0 4.54e-01 83.2% 98.2%
3575293 2011.2.1.13 a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HTH_69 0.64 40.0 2.86e-01 87.4% 20.3%
5067037 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.63 41.0 4.39e-01 86.3% 77.5%
4199769 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.63 41.0 3.10e-01 84.2% 28.2%
4952731 101.1.2.728 alpha arrays › HTH › HTH › winged helix domain › PF31122 0.62 38.0 3.75e-01 85.3% 56.0%
3967591 101.1.2.162 alpha arrays › HTH › HTH › winged helix domain › DprA_WH 0.62 37.0 4.27e-01 80.0% 84.6%
3706858 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.61 42.0 3.74e-01 70.5% 62.2%
5002376 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 55.0 5.31e-01 98.9% 87.6%
5038207 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 39.0 3.65e-01 100.0% 51.7%
4877083 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.60 40.0 3.65e-01 100.0% 50.0%
5022580 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 52.0 5.40e-01 95.8% 98.9%
1180068 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.59 42.0 4.38e-01 86.3% 81.4%
3165017 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.58 41.0 4.25e-01 86.3% 77.8%
3498392 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 52.0 4.82e-01 100.0% 89.1%
3884681 292.2.1.10 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › C5orf34-like_N 0.58 40.0 4.06e-01 84.2% 72.6%
3718996 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 47.0 2.95e-01 87.4% 66.6%
5019697 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.57 48.0 4.95e-01 100.0% 95.6%
3479226 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.57 38.0 3.75e-01 71.6% 65.0%
3964341 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.57 41.0 4.30e-01 87.4% 84.7%
5052149 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 48.0 4.94e-01 100.0% 96.7%
3929989 330.16.1.2 a+b two layers › dsRBD-like › ODA16 N-terminal domain › ODA16 N-terminal domain › KAP 0.56 45.0 4.68e-01 90.5% 98.8%
4411020 101.1.2.142 alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.56 43.0 4.45e-01 94.7% 86.7%
4971257 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 3.67e-01 89.5% 54.1%
4502887 1.11.1.1 beta barrels › cradle loop barrel › Photosystem II accessory factor Psb28 › Photosystem II accessory factor Psb28 › Psb28 0.55 40.0 3.95e-01 76.8% 96.2%
4956004 2004.1.1.1195 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Topoisom_bac 0.54 45.0 2.94e-01 89.5% 22.7%
3512305 221.1.1.55 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.54 38.0 3.81e-01 74.7% 73.0%
3963197 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.54 44.0 3.50e-01 89.5% 50.8%
5062049 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.53 44.0 3.63e-01 89.5% 57.1%
5008041 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 47.0 4.21e-01 100.0% 99.3%
3472532 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 4.07e-01 100.0% 93.1%
3404964 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.53 47.0 4.43e-01 100.0% 81.7%
3538619 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 4.04e-01 94.7% 81.5%
3094740 220.1.1.14 beta barrels › PH domain-like › PH domain-like › PH domain-like › DM10_dom 0.52 43.0 3.90e-01 94.7% 82.1%
4116159 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.52 38.0 3.94e-01 77.9% 93.3%
3593376 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 37.0 3.70e-01 73.7% 89.5%
3263744 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.51 39.0 3.83e-01 81.1% 79.0%
3719371 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.51 45.0 4.08e-01 96.8% 91.2%