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IMGVR_UViG_3300028602_000031-3300028602-Ga0265294_1000081830

Arc-Vir

IMGVR_UViG_3300028602_000031-3300028602-Ga0265294_1000081830

Quality

79.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-55
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gv9A05 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.92 82.0 7.80e-01 98.0% 83.1%
3rq9A00 1.10.287.2500 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.91 82.0 7.02e-01 98.0% 65.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.90 82.0 7.17e-01 100.0% 72.6%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.89 75.0 7.75e-01 92.2% 100.0%
3na7A00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.88 79.0 4.98e-01 100.0% 46.0%
3edvA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.87 79.0 5.25e-01 100.0% 27.9%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.87 79.0 5.49e-01 100.0% 47.7%
4abmD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.86 78.0 6.73e-01 100.0% 70.1%
3k1hA00 3.30.1120.180 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Flagellar FLiS export co-chaperone, HP1076 0.86 72.0 5.47e-01 92.2% 93.0%
1x04A00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.86 76.0 5.00e-01 100.0% 41.5%
1zpyA00 6.10.140.1960 Special › Helix non-globular › Helix Hairpins › 0.85 75.0 6.17e-01 100.0% 58.2%
1vcsA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.85 73.0 5.72e-01 96.1% 47.1%
3p42A02 6.10.250.2280 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.84 67.0 6.05e-01 92.2% 64.3%
2psmA00 1.20.1250.70 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 0.83 69.0 5.24e-01 92.2% 40.2%
2gsqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.83 73.0 5.72e-01 100.0% 50.9%
2ptfB02 1.20.58.290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hypothetical membrane protein ta0354_69_121. 0.82 56.0 5.47e-01 72.5% 66.7%
1eteA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.82 70.0 5.02e-01 92.2% 59.7%
1kfdA02 1.20.1060.10 Mainly Alpha › Up-down Bundle › Taq DNA Polymerase; Chain T, domain 4 › Taq DNA Polymerase; Chain T, domain 4 0.82 71.0 6.40e-01 98.0% 73.2%
1m5iA00 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.81 70.0 5.59e-01 100.0% 53.3%
4djgB00 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.81 66.0 6.77e-01 96.1% 100.0%
3caxA01 1.20.120.520 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › nmb1532 protein domain like 0.81 71.0 4.63e-01 100.0% 65.4%
1p49A02 1.10.287.550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.80 70.0 6.72e-01 100.0% 84.7%
1z6tA05 1.25.40.370 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.79 61.0 4.39e-01 82.4% 30.1%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.79 68.0 5.54e-01 100.0% 52.5%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.79 69.0 4.46e-01 100.0% 22.0%
1z0jB00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.77 62.0 6.27e-01 90.2% 92.2%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.76 65.0 5.81e-01 100.0% 69.3%
3l1nA01 6.10.140.790 Special › Helix non-globular › Helix Hairpins › 0.76 63.0 6.36e-01 100.0% 94.1%
5m72A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.76 51.0 3.64e-01 76.5% 24.0%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 56.0 5.31e-01 90.2% 66.7%
2lhrA00 1.20.58.1270 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 55.0 4.81e-01 78.4% 52.6%
4hz4A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 63.0 4.96e-01 100.0% 51.8%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 63.0 6.03e-01 100.0% 96.7%
6tkvA01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 61.0 5.69e-01 100.0% 80.9%
1yzmA00 4.10.860.20 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › Rabenosyn, Rab binding domain 0.73 58.0 6.00e-01 88.2% 97.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.73 64.0 5.33e-01 100.0% 58.9%
3h6pC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.73 59.0 5.77e-01 90.2% 85.7%
3anwA01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.72 58.0 4.65e-01 96.1% 44.2%
2lf0A01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.72 60.0 5.82e-01 100.0% 86.7%
1yy7A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 62.0 4.94e-01 100.0% 49.5%
4errB00 1.20.58.1190 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 58.0 5.09e-01 100.0% 60.2%
4cybD00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.71 59.0 4.19e-01 100.0% 29.8%
1b48A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.71 60.0 4.79e-01 100.0% 46.8%
3c4wB01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.70 54.0 3.65e-01 86.3% 23.4%
4toiA02 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.69 54.0 5.55e-01 88.2% 89.6%
1zkdA03 6.10.250.3300 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.68 53.0 5.69e-01 84.3% 100.0%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.53e-01 96.1% 70.9%
4gouA01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.68 57.0 4.16e-01 98.0% 35.1%
4u1cA01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.68 53.0 5.35e-01 98.0% 90.4%
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.68 55.0 3.87e-01 98.0% 90.4%
1z0pA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.68 56.0 5.11e-01 100.0% 72.6%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 55.0 4.46e-01 100.0% 47.3%
2vx2G02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.66 49.0 4.85e-01 86.3% 76.4%
7dukB01 1.10.287.610 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.65 49.0 5.14e-01 82.4% 97.8%
3k59A06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.59 43.0 4.45e-01 82.4% 100.0%
1n69B00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.54 40.0 3.61e-01 90.2% 56.2%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3794795 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.93 86.0 6.72e-01 100.0% 52.0%
3715996 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.92 78.0 7.93e-01 90.2% 94.0%
3167538 603.1.1.3 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › V-SNARE 0.92 84.0 6.30e-01 100.0% 45.2%
3698212 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.91 84.0 4.93e-01 100.0% 15.1%
4572664 604.3.1.0 alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.91 83.0 7.37e-01 100.0% 74.3%
4405928 5086.1.1.196 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HH_YknX 0.90 83.0 7.36e-01 100.0% 74.3%
1821875 4970.1.1.1 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B 0.89 79.0 7.49e-01 100.0% 83.1%
3702979 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.89 81.0 4.63e-01 100.0% 12.0%
4984327 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.89 81.0 6.25e-01 100.0% 49.5%
5056100 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.89 81.0 7.04e-01 100.0% 69.3%
5012794 4333.1.1.0 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain 0.89 81.0 4.75e-01 100.0% 14.6%
3391706 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.88 79.0 5.79e-01 100.0% 40.0%
3788338 604.12.1.9 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 0.87 74.0 6.45e-01 96.1% 63.5%
3596786 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.86 77.0 4.45e-01 100.0% 39.1%
4039014 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.85 76.0 5.87e-01 100.0% 47.3%
3898566 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.85 76.0 5.47e-01 100.0% 52.1%
4220356 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.85 77.0 4.58e-01 100.0% 15.5%
3504339 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.85 76.0 5.85e-01 100.0% 47.3%
3953227 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.85 75.0 6.00e-01 100.0% 52.0%
3940791 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.84 75.0 5.98e-01 100.0% 52.0%
148414 605.4.1.2 alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein › SCAB_CC 0.84 65.0 6.61e-01 86.3% 87.8%
3737750 109.4.1.255 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_22 0.84 70.0 4.89e-01 92.2% 30.3%
3838686 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.83 74.0 7.01e-01 100.0% 85.0%
3183519 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.83 73.0 7.13e-01 98.0% 92.7%
3927560 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.83 70.0 6.69e-01 96.1% 83.3%
3349325 5086.1.1.135 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF7615 0.83 72.0 6.26e-01 100.0% 65.0%
222846 150.5.1.1 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › WXG100 0.82 72.0 5.93e-01 100.0% 55.9%
3962893 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.80 68.0 5.66e-01 100.0% 57.9%
3180530 3711.1.1.0 alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein 0.80 69.0 5.42e-01 100.0% 47.3%
3731974 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.80 69.0 5.41e-01 100.0% 46.4%
3250840 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.80 70.0 6.10e-01 100.0% 81.0%
3276272 601.48.1.0 alpha bundles › Four-helical up-and-down bundle › vWA2 C-terminal domain › vWA2 C-terminal domain 0.79 70.0 4.91e-01 100.0% 35.6%
4027274 273.1.1.2 a+b three layers › PR-1-like › PR-1-like › PR-1-like › CEP76_C 0.79 63.0 4.55e-01 94.1% 31.7%
3770592 192.15.1.145 alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains › Xin 0.78 64.0 5.80e-01 100.0% 67.1%
4026159 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.78 62.0 6.30e-01 92.2% 96.0%
3482751 192.1.1.0 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain 0.78 65.0 6.03e-01 94.1% 75.4%
3180974 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.78 65.0 6.40e-01 98.0% 100.0%
5047074 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.75 64.0 3.85e-01 100.0% 14.1%
3610266 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.74 63.0 4.83e-01 100.0% 73.6%
4969335 3352.1.1.0 alpha bundles › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain › STT3/PglB/AglB transmembrane domain 0.74 63.0 3.82e-01 100.0% 38.6%
4322913 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.71 51.0 5.47e-01 78.4% 100.0%
3243586 192.7.1.0 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.64 54.0 4.74e-01 100.0% 66.3%