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IMGVR_UViG_3300028602_000031-3300028602-Ga0265294_1000081870
Arc-VirIMGVR_UViG_3300028602_000031-3300028602-Ga0265294_1000081870
Identity
- Kingdom:
- archaea
Quality
93.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-181
Domain cluster:
rep: MK170447__AZF89918.1__X__00084__D3-182
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF09250.17 best | Prim-Pol | 26.7 | 9.40e-06 | 80.6% | 79.8% |
CATH (2)
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4940784 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.84 | 68.0 | 7.30e-01 | 98.3% | 94.8% |
| 3280020 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.73 | 66.0 | 6.66e-01 | 100.0% | 94.9% |
| 7174 | 862.1.1.3 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Prim-Pol | 0.73 | 68.0 | 6.40e-01 | 100.0% | 88.1% |
| 4962598 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.69 | 62.0 | 6.37e-01 | 98.9% | 98.2% |
| 5066297 | 862.1.1.5 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › LigD_Prim-Pol | 0.66 | 61.0 | 5.21e-01 | 100.0% | 91.6% |
| 3945892 | 862.1.1.6 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › Replicase | 0.61 | 50.0 | 5.25e-01 | 95.4% | 96.8% |
| 3522165 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.56 | 23.0 | 3.24e-01 | 70.3% | 76.5% |
| 3602915 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 26.0 | 3.43e-01 | 78.9% | 78.9% |
| 3853177 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 24.0 | 3.17e-01 | 72.0% | 81.1% |
| 3505908 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.50 | 25.0 | 3.20e-01 | 93.7% | 83.2% |
| 3249348 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 26.0 | 3.34e-01 | 79.4% | 88.4% |
D2
high
residues 184-330
Domain cluster:
rep: IMGVR_UViG_3300033153_015493-3300033153-Ga0366824_101405734__D185-314
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gceA00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.67 | 26.0 | 3.12e-01 | 80.3% | 50.0% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 39.0 | 3.36e-01 | 78.2% | 98.3% |