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IMGVR_UViG_3300028602_000033-3300028602-Ga0265294_1000082545
Arc-VirIMGVR_UViG_3300028602_000033-3300028602-Ga0265294_1000082545
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-108
Domain cluster:
rep: NC_070958.1__YP_010669009.1__PQC08_gp014__00261__D13-86
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p84A02 | 2.30.30.290 | Mainly Beta › Roll › SH3 type barrels. › YopX-like domains | 0.73 | 43.0 | 5.05e-01 | 75.7% | 83.6% |
| 2budA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 43.0 | 4.59e-01 | 96.1% | 79.3% |
| 1wosA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.63 | 37.0 | 4.05e-01 | 97.1% | 69.8% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.63 | 38.0 | 4.75e-01 | 85.4% | 100.0% |
| 1pj5A05 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.62 | 38.0 | 4.23e-01 | 99.0% | 78.2% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.61 | 43.0 | 4.53e-01 | 73.8% | 94.7% |
| 3vpbE00 | 2.20.28.160 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.60 | 26.0 | 3.50e-01 | 73.8% | 75.0% |
| 2lqkA00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 37.0 | 4.33e-01 | 70.9% | 94.3% |
| 1wdiA02 | 2.40.10.240 | Mainly Beta › Beta Barrel › Thrombin, subunit H › QueA-like | 0.57 | 30.0 | 3.47e-01 | 90.3% | 68.5% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.57 | 40.0 | 3.70e-01 | 93.2% | 56.5% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.57 | 39.0 | 4.14e-01 | 70.9% | 78.5% |
| 3jb9F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 4.23e-01 | 92.2% | 92.7% |
| 1whjA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.54 | 39.0 | 3.96e-01 | 97.1% | 75.5% |
| 1df0A02 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 40.0 | 4.24e-01 | 94.2% | 93.5% |
| 4r3dA03 | 2.60.120.1680 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 32.0 | 3.02e-01 | 92.2% | 46.0% |
| 3lq6A02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.52 | 36.0 | 3.55e-01 | 72.8% | 95.6% |
| 1fhoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 4.08e-01 | 90.3% | 79.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3315471 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.74 | 44.0 | 4.86e-01 | 92.2% | 72.9% |
| 3927214 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 50.0 | 4.75e-01 | 98.1% | 59.2% |
| 4524363 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.72 | 45.0 | 5.54e-01 | 73.8% | 100.0% |
| 4201878 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.72 | 45.0 | 5.51e-01 | 73.8% | 100.0% |
| 4051625 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.71 | 44.0 | 5.48e-01 | 70.9% | 100.0% |
| 3599172 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 44.0 | 5.42e-01 | 73.8% | 100.0% |
| 4104219 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 44.0 | 5.40e-01 | 73.8% | 100.0% |
| 4292289 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 44.0 | 5.38e-01 | 73.8% | 100.0% |
| 3950208 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 44.0 | 5.34e-01 | 70.9% | 100.0% |
| 4146937 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 44.0 | 5.36e-01 | 70.9% | 100.0% |
| 4041586 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.70 | 43.0 | 5.33e-01 | 73.8% | 100.0% |
| 4284764 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 43.0 | 5.29e-01 | 73.8% | 100.0% |
| 4345080 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 43.0 | 5.26e-01 | 73.8% | 100.0% |
| 4101580 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.69 | 43.0 | 5.25e-01 | 73.8% | 100.0% |
| 3590827 | 4.1.1.57 ↗ | beta barrels › SH3 › SH3 › SH3 › EFP_N | 0.68 | 43.0 | 5.17e-01 | 73.8% | 100.0% |
| 4944212 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.65 | 44.0 | 4.69e-01 | 99.0% | 79.5% |
| 648 | 4.8.1.6 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot | 0.65 | 43.0 | 4.69e-01 | 95.1% | 79.5% |
| 3768347 | 4.1.1.230 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7030 | 0.65 | 41.0 | 5.01e-01 | 88.3% | 100.0% |
| 3822839 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.65 | 36.0 | 3.95e-01 | 94.2% | 65.9% |
| 3950185 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.63 | 38.0 | 4.06e-01 | 98.1% | 67.8% |
| 4123849 | 1.1.8.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C | 0.63 | 37.0 | 4.08e-01 | 97.1% | 70.6% |
| 3183652 | 239.1.1.5 ↗ | beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › tRNA-synt_1c_C | 0.63 | 33.0 | 3.28e-01 | 98.1% | 47.3% |
| 4580145 | 1.1.8.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Baseplate_J | 0.62 | 39.0 | 4.27e-01 | 96.1% | 77.6% |
| 4643742 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 41.0 | 4.49e-01 | 70.9% | 97.6% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.60 | 41.0 | 4.33e-01 | 73.8% | 76.8% |
| 4256943 | 219.1.1.18 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39 | 0.59 | 40.0 | 3.67e-01 | 90.3% | 51.4% |
| 3199895 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.59 | 41.0 | 4.24e-01 | 73.8% | 76.8% |
| 3881192 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 47.0 | 3.92e-01 | 94.2% | 51.8% |
| 3236073 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.58 | 39.0 | 4.55e-01 | 94.2% | 96.0% |
| 3783617 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.54 | 40.0 | 4.54e-01 | 95.1% | 100.0% |
| 3496126 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.53 | 41.0 | 4.45e-01 | 95.1% | 96.6% |
| 4269820 | 3820.1.1.1 ↗ | a+b complex topology › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › CRISPR-associated endonuclease Cas9 C-terminal domain › Cas9_PI | 0.53 | 44.0 | 3.68e-01 | 92.2% | 99.4% |
| 4162971 | 1.1.12.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth | 0.51 | 38.0 | 3.81e-01 | 81.6% | 96.4% |
| 3234172 | 1.1.7.45 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › eEFSec_4th | 0.51 | 40.0 | 4.27e-01 | 96.1% | 97.8% |