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IMGVR_UViG_3300028603_003327-3300028603-Ga0265293_100383043

Arc-Vir

IMGVR_UViG_3300028603_003327-3300028603-Ga0265293_100383043

Quality

83.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-54
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mvpA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 54.0 5.82e-01 74.1% 78.7%
4jykA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.82 57.0 5.56e-01 81.5% 67.2%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.81 69.0 5.24e-01 94.4% 43.5%
3rv0C02 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.79 71.0 5.16e-01 100.0% 56.2%
2zb9A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 54.0 5.59e-01 77.8% 78.0%
3pm6A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.77 69.0 4.28e-01 100.0% 36.2%
1n5uA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.77 58.0 4.71e-01 85.2% 43.7%
3aqtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.75 62.0 4.27e-01 100.0% 26.7%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.74 56.0 4.01e-01 79.6% 42.1%
1dj2A02 1.10.300.10 Mainly Alpha › Orthogonal Bundle › Adenylosuccinate Synthetase, subunit A; domain 2 › Adenylosuccinate Synthetase, subunit A, domain 2 0.74 56.0 4.58e-01 81.5% 44.4%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.74 55.0 4.23e-01 77.8% 37.5%
3b0cW00 1.10.20.10 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A 0.72 59.0 5.45e-01 100.0% 69.9%
3ff5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 49.0 4.92e-01 77.8% 72.2%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.71 58.0 5.22e-01 94.4% 66.7%
4hr1A00 1.20.1270.410 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.70 63.0 4.81e-01 98.1% 100.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.70 60.0 3.84e-01 100.0% 49.8%
3icxA01 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.70 55.0 4.93e-01 85.2% 70.7%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.70 55.0 4.85e-01 85.2% 60.8%
1sg7A00 1.10.1740.70 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › ChaB 0.70 52.0 4.79e-01 85.2% 78.7%
1f2eA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.69 47.0 3.74e-01 70.4% 42.5%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.69 55.0 4.72e-01 85.2% 55.4%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.69 53.0 4.98e-01 83.3% 72.7%
5fmgG00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.69 59.0 3.92e-01 98.1% 42.5%
4gzrC00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.68 56.0 5.41e-01 90.7% 86.9%
3fixA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 53.0 3.82e-01 87.0% 28.5%
4evxA00 1.10.1740.240 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.68 59.0 4.90e-01 98.1% 78.4%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.68 58.0 4.38e-01 96.3% 61.7%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.68 47.0 4.24e-01 74.1% 54.7%
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.67 54.0 4.88e-01 94.4% 66.7%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.67 54.0 5.24e-01 96.3% 95.3%
5u4nA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 58.0 3.56e-01 100.0% 37.4%
2pvqA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.66 51.0 4.08e-01 85.2% 42.5%
3p8cD02 6.10.280.150 Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 50.0 3.62e-01 79.6% 51.1%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.65 53.0 3.74e-01 98.1% 75.9%
2bg1A01 3.90.1310.40 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › 0.65 49.0 4.52e-01 87.0% 64.9%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.65 53.0 4.77e-01 90.7% 67.1%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.65 52.0 3.96e-01 100.0% 36.1%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.63 44.0 4.37e-01 72.2% 67.2%
2lrmA00 1.10.890.30 Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein 0.63 46.0 3.99e-01 92.6% 50.0%
2itbB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.63 55.0 3.76e-01 100.0% 51.5%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 54.0 3.26e-01 98.1% 38.8%
4h63K00 1.10.287.3490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.63 46.0 3.91e-01 83.3% 46.9%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.62 53.0 4.12e-01 94.4% 65.0%
3jsjC00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 52.0 3.72e-01 100.0% 75.4%
1urfA00 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.62 53.0 4.58e-01 92.6% 63.0%
2kmuA00 1.10.10.1460 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 43.0 4.33e-01 88.9% 71.4%
4g80T00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.61 56.0 4.07e-01 100.0% 56.8%
4ye6A01 1.10.8.1290 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 0.61 46.0 3.82e-01 83.3% 67.3%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 48.0 3.76e-01 94.4% 38.8%
2db7A01 6.10.250.980 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 51.0 5.21e-01 98.1% 100.0%
2f2gA00 1.20.910.10 Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like 0.59 53.0 3.50e-01 100.0% 34.4%
1e6cA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 47.0 3.40e-01 92.6% 31.2%
1ij5A01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 51.0 4.58e-01 98.1% 69.7%
3kdrA01 1.20.1270.210 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 42.0 3.44e-01 98.1% 40.6%
3uarA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.56 45.0 3.57e-01 87.0% 43.9%
ECOD (48)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3512559 192.1.1.37 alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF7753 0.88 77.0 7.17e-01 94.4% 83.1%
4995521 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.87 80.0 5.34e-01 100.0% 28.9%
4002021 7111.1.1.1 alpha bundles › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiquinol-cytochrome C chaperone, C-terminal domain › Ubiq_cyt_C_chap 0.86 74.0 5.12e-01 100.0% 30.0%
4518916 4144.1.1.8 alpha duplicates or obligate multimers › YejL-like › YejL-like › YejL-like › GlutR_dimer 0.84 75.0 6.70e-01 98.1% 70.7%
3272900 109.3.1.176 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2, Ank_3, Ank_4 0.84 67.0 4.03e-01 87.0% 13.9%
4564711 547.1.1.1 alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer 0.84 74.0 6.61e-01 98.1% 70.7%
3281424 3755.3.1.299 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF445 0.83 64.0 4.37e-01 85.2% 25.9%
4267174 614.1.1.24 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › GlutR_dimer 0.83 73.0 6.51e-01 98.1% 70.7%
3973864 6026.1.1.2 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › GlpM 0.82 71.0 5.64e-01 100.0% 48.6%
3609798 320.1.1.0 a+b two layers › R3H domain-like › R3H domain › R3H domain 0.81 71.0 5.53e-01 98.1% 46.1%
4211233 4120.1.1.60 few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP › GlutR_dimer 0.80 71.0 6.25e-01 100.0% 67.5%
3597348 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.80 70.0 4.33e-01 100.0% 17.7%
5000270 3646.1.1.0 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters 0.80 72.0 4.71e-01 100.0% 31.8%
4988114 3646.1.1.1 alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ 0.79 71.0 4.60e-01 100.0% 23.0%
3486786 165.3.1.0 alpha duplicates or obligate multimers › Dimerisation interlock › Phenylalanine zipper › Phenylalanine zipper 0.79 69.0 6.95e-01 100.0% 98.2%
3621595 4336.2.1.3 alpha duplicates or obligate multimers › YheA/YmcA-like › Protein SUS1 › Protein SUS1 › COMPASS-Shg1 0.79 67.0 5.84e-01 94.4% 62.5%
3602986 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.78 70.0 5.77e-01 100.0% 78.9%
3643105 6026.1.1.1 alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 0.77 63.0 4.60e-01 94.4% 32.9%
3866974 7087.1.1.1 alpha bundles › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › Emopamil binding protein (EBP) transmembrane domain › EBP 0.77 66.0 4.41e-01 100.0% 25.0%
3248839 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 69.0 5.27e-01 100.0% 48.3%
3831185 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.76 67.0 6.17e-01 100.0% 77.1%
3968144 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.76 52.0 4.83e-01 77.8% 58.5%
3566658 2006.1.4.33 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 0.76 66.0 5.91e-01 98.1% 73.3%
3804219 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.74 66.0 5.52e-01 98.1% 62.2%
4952853 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.74 66.0 5.40e-01 98.1% 57.9%
4286282 507.1.1.1 alpha arrays › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB helicase N-terminal domain-related › DnaB 0.74 65.0 4.61e-01 98.1% 36.3%
4951179 5058.1.1.2 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st 0.73 63.0 5.21e-01 100.0% 68.0%
3707358 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.73 66.0 4.27e-01 100.0% 71.1%
3420476 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 5.37e-01 92.6% 66.7%
4983939 5059.1.1.1 alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA 0.72 58.0 4.17e-01 87.0% 71.7%
3491670 614.1.1.0 alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain 0.72 51.0 5.16e-01 79.6% 74.5%
3666433 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 60.0 4.64e-01 98.1% 41.6%
4649366 304.58.1.0 a+b two layers › Alpha-beta plaits › FepE-like › FepE-like 0.72 57.0 3.53e-01 85.2% 16.1%
5017842 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.71 62.0 5.33e-01 98.1% 62.4%
3298325 3846.1.1.0 alpha bundles › IcmR › IcmR › IcmR 0.71 54.0 5.70e-01 87.0% 100.0%
3950977 5058.1.1.9 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V 0.69 60.0 4.33e-01 100.0% 74.8%
3705250 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.69 56.0 4.04e-01 100.0% 32.2%
3628497 4082.1.1.0 alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain 0.68 54.0 5.61e-01 96.3% 92.0%
3491310 3826.1.1.67 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Med10 0.68 53.0 4.70e-01 96.3% 60.0%
5061636 150.1.1.205 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Trp_dioxygenase 0.67 57.0 4.89e-01 92.6% 64.3%
5012157 605.1.1.354 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › MS_channel_1st_1 0.65 57.0 4.90e-01 98.1% 62.4%
3810882 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.65 48.0 3.05e-01 85.2% 15.6%
4021036 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.64 55.0 4.54e-01 98.1% 62.0%
3690556 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.63 50.0 4.86e-01 88.9% 80.0%
4403895 2004.1.1.795 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF27377 0.62 53.0 3.66e-01 100.0% 80.5%
3215346 397.7.1.0 few secondary structure elements › Toxic hairpin › Ribosome-inactivating protein luffin P1 › Ribosome-inactivating protein luffin P1 0.61 50.0 5.17e-01 96.3% 96.0%
3280999 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.60 54.0 3.82e-01 98.1% 36.8%
3331556 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.60 44.0 3.80e-01 87.0% 47.4%