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IMGVR_UViG_3300028603_003932-3300028603-Ga0265293_100410289

Arc-Vir

IMGVR_UViG_3300028603_003932-3300028603-Ga0265293_100410289

Quality

91.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 6-75
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23835.2 best DUF7205 26.6 7.10e-06 91.4% 79.0%
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yo1A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.68 43.0 3.97e-01 82.9% 50.6%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.91e-01 84.3% 85.7%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.13e-01 100.0% 88.9%
1fgyA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 49.0 4.07e-01 85.7% 75.4%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.15e-01 100.0% 56.0%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 50.0 4.03e-01 98.6% 46.0%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.61 43.0 3.22e-01 85.7% 28.7%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 38.0 4.27e-01 84.3% 91.7%
5d3xB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 3.86e-01 87.1% 58.2%
3cp3A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.61 52.0 4.26e-01 100.0% 52.0%
3ec6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 48.0 3.96e-01 95.7% 48.4%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 50.0 4.11e-01 100.0% 51.6%
1vloA04 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.59 42.0 3.87e-01 91.4% 58.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 45.0 3.66e-01 85.7% 61.7%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 51.0 3.78e-01 95.7% 41.7%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.51e-01 100.0% 33.2%
5bncB01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 48.0 3.75e-01 98.6% 42.3%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 47.0 3.78e-01 95.7% 44.1%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 52.0 4.39e-01 100.0% 63.2%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 41.0 3.55e-01 84.3% 47.7%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.57 43.0 3.85e-01 90.0% 56.3%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 41.0 3.93e-01 97.1% 64.4%
5ylyA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 49.0 4.24e-01 97.1% 96.4%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 45.0 3.36e-01 90.0% 78.6%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.90e-01 85.7% 76.0%
5kycB02 2.20.210.10 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily 0.56 38.0 4.21e-01 81.4% 92.5%
1v5uA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.78e-01 88.6% 79.5%
1w99A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.56 49.0 3.61e-01 100.0% 63.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 42.0 3.20e-01 84.3% 79.8%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 48.0 3.01e-01 100.0% 16.8%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.99e-01 100.0% 73.4%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.34e-01 94.3% 81.8%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 47.0 3.37e-01 94.3% 36.9%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 41.0 3.65e-01 84.3% 79.6%
2wy3B00 2.60.40.1990 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.76e-01 100.0% 67.2%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.54 44.0 3.36e-01 97.1% 46.8%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.49e-01 87.1% 65.1%
1eazA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.66e-01 85.7% 76.7%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.56e-01 88.6% 61.2%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.54e-01 84.3% 69.7%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 41.0 3.54e-01 85.7% 67.3%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 41.0 3.16e-01 88.6% 87.0%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 41.0 3.67e-01 90.0% 77.1%
1z24A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 45.0 3.37e-01 100.0% 54.5%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.52 40.0 2.85e-01 88.6% 74.8%
3op1A02 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.52 45.0 3.89e-01 98.6% 71.2%
1fyhB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 45.0 4.01e-01 98.6% 79.6%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.52 44.0 3.59e-01 100.0% 72.2%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.52 44.0 3.88e-01 100.0% 71.8%
2vrsA03 2.60.90.40 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.51 44.0 3.66e-01 100.0% 93.2%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 45.0 4.41e-01 100.0% 93.3%
8ornD01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 41.0 3.23e-01 94.3% 90.3%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.51 38.0 3.33e-01 85.7% 71.8%
1xkiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.31e-01 87.1% 96.9%
8t5tA01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 41.0 3.17e-01 95.7% 85.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3520312 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.24e-01 90.0% 68.2%
3236689 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 51.0 5.65e-01 98.6% 98.2%
5006274 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.70 54.0 4.23e-01 94.3% 40.7%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.69 53.0 3.85e-01 87.1% 31.7%
3502086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 42.0 4.72e-01 92.9% 80.0%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 4.97e-01 98.6% 65.3%
3876680 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 54.0 4.74e-01 94.3% 60.0%
3593636 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 53.0 4.62e-01 88.6% 82.7%
3576940 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 60.0 4.16e-01 100.0% 33.3%
4929875 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.66 48.0 4.30e-01 94.3% 55.0%
4028811 10.13.1.0 beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A 0.65 52.0 4.48e-01 88.6% 75.7%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 57.0 4.65e-01 97.1% 79.2%
4329871 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.64 56.0 4.09e-01 97.1% 73.7%
3880508 4.1.1.129 beta barrels › SH3 › SH3 › SH3 › Tudor_5 0.64 50.0 4.56e-01 97.1% 63.2%
4136160 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.64 56.0 4.94e-01 100.0% 67.0%
3960559 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.63 46.0 3.86e-01 78.6% 80.5%
3815495 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 50.0 5.02e-01 90.0% 87.1%
3587906 4.1.1.46 beta barrels › SH3 › SH3 › SH3 › VEG 0.62 54.0 5.25e-01 98.6% 92.5%
5002629 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.62 49.0 3.88e-01 95.7% 42.9%
3272197 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 54.0 4.73e-01 100.0% 73.3%
3481729 4.11.1.2 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.61 54.0 4.52e-01 98.6% 70.0%
3730266 220.1.1.89 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_4 0.61 48.0 3.55e-01 87.1% 67.4%
3581025 376.1.2.15 few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › SOS1_NGEF_PH 0.60 46.0 3.64e-01 85.7% 54.4%
3781440 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.60 53.0 5.11e-01 100.0% 85.0%
4139778 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 49.0 4.83e-01 97.1% 84.9%
3700838 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 46.0 3.84e-01 85.7% 56.2%
3559299 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 47.0 3.89e-01 87.1% 60.8%
3572210 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.60 47.0 3.56e-01 84.3% 97.5%
3515688 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 46.0 3.92e-01 85.7% 80.8%
58 1.1.5.31 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyridox_ox_2 0.59 50.0 4.11e-01 100.0% 51.6%
4583479 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.59 46.0 3.49e-01 85.7% 79.2%
1790393 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 54.0 5.11e-01 100.0% 86.6%
3618718 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 47.0 3.98e-01 87.1% 71.3%
3587958 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 44.0 4.07e-01 81.4% 81.1%
3787756 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.58 50.0 3.82e-01 95.7% 41.8%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 52.0 4.47e-01 100.0% 65.5%
4947401 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.58 51.0 3.98e-01 100.0% 47.1%
3555736 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.58 45.0 3.59e-01 87.1% 50.7%
2532980 219.1.1.53 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Vasohibin 0.57 43.0 3.07e-01 85.7% 28.7%
5031647 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 44.0 4.48e-01 97.1% 85.7%
4071824 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 45.0 4.48e-01 95.7% 82.7%
3731651 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 4.11e-01 90.0% 73.3%
3913573 220.1.1.30 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_BEACH 0.57 44.0 3.72e-01 85.7% 70.8%
3937459 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 44.0 3.98e-01 87.1% 82.0%
4605899 11.1.1.1032 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2544 0.55 45.0 3.81e-01 97.1% 77.0%
4634055 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.55 40.0 3.06e-01 84.3% 30.0%
3926758 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 41.0 3.29e-01 85.7% 63.6%
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.55 46.0 4.56e-01 100.0% 92.0%
4933308 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.54 47.0 3.71e-01 100.0% 44.5%
3770542 11.2.1.25 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.54 39.0 3.23e-01 80.0% 73.6%
5005890 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 42.0 3.27e-01 90.0% 84.6%
3206868 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 47.0 3.82e-01 98.6% 61.5%
3781180 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.53 48.0 4.11e-01 100.0% 96.4%
3215466 11.2.1.25 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.53 38.0 3.36e-01 80.0% 90.4%
4203746 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.53 42.0 3.28e-01 94.3% 86.9%
3799718 11.2.1.25 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.52 38.0 2.71e-01 81.4% 42.0%
4339768 11.2.1.25 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PL48 0.52 38.0 3.25e-01 80.0% 83.2%
4955093 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 45.0 4.11e-01 98.6% 76.8%
3387846 1.1.7.10 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.52 45.0 3.81e-01 98.6% 70.8%
3276452 220.4.1.6 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › Peptidase_M8 0.51 42.0 2.65e-01 100.0% 28.1%
5078283 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 43.0 3.79e-01 94.3% 78.1%
D2 medium residues 79-119
PDB
Domain cluster: representative