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IMGVR_UViG_3300028620_000261-3300028620-Ga0257139_10036688
Arc-VirIMGVR_UViG_3300028620_000261-3300028620-Ga0257139_10036688
Identity
- Kingdom:
- archaea
Quality
81.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-118
Domain cluster:
rep: IMGVR_UViG_3300005099_000002-3300005099-Ga0072682_10056737__D8-106
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kkuA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.70 | 62.0 | 5.81e-01 | 100.0% | 79.1% |
| 1t62B00 | 3.10.400.10 | Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase | 0.69 | 64.0 | 5.65e-01 | 100.0% | 74.2% |
| 1xneA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.69 | 56.0 | 5.76e-01 | 100.0% | 91.2% |
| 4rcjA01 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.67 | 48.0 | 4.45e-01 | 100.0% | 58.9% |
| 7cayA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.66 | 41.0 | 4.44e-01 | 100.0% | 73.0% |
| 1zboA01 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.58 | 41.0 | 4.20e-01 | 100.0% | 76.1% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 47.0 | 4.78e-01 | 100.0% | 88.9% |
| 2pt7G02 | 3.30.1370.180 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.56 | 29.0 | 3.72e-01 | 96.6% | 88.1% |
| 2hq7B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.55 | 44.0 | 4.20e-01 | 100.0% | 72.5% |
| 1nlrA00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.53 | 38.0 | 3.12e-01 | 75.2% | 88.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022429 | 1.1.9.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 | 0.82 | 66.0 | 6.51e-01 | 100.0% | 80.0% |
| 4155252 | 1.1.9.35 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF30643 | 0.80 | 63.0 | 6.66e-01 | 100.0% | 93.3% |
| 3944719 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.78 | 67.0 | 6.30e-01 | 100.0% | 77.0% |
| 3165125 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.77 | 61.0 | 6.44e-01 | 100.0% | 93.3% |
| 4953076 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.77 | 66.0 | 6.60e-01 | 100.0% | 89.2% |
| 5023996 | 1.1.9.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › ASCH | 0.77 | 65.0 | 6.68e-01 | 100.0% | 93.8% |
| 4967879 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.71 | 53.0 | 5.82e-01 | 100.0% | 93.7% |
| 3418278 | 1.1.9.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › YTH | 0.66 | 48.0 | 4.16e-01 | 100.0% | 48.6% |
| 3363680 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 40.0 | 4.20e-01 | 100.0% | 67.3% |
| 4444321 | 1.1.9.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › LON_substr_bdg | 0.64 | 43.0 | 3.52e-01 | 100.0% | 37.2% |
| 4934245 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.62 | 46.0 | 4.15e-01 | 100.0% | 56.2% |
| 3199622 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.58 | 53.0 | 4.91e-01 | 100.0% | 79.3% |
| 4964155 | 1.1.9.31 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA | 0.58 | 42.0 | 4.03e-01 | 100.0% | 64.3% |
| 3953882 | 1.1.5.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx | 0.58 | 46.0 | 4.49e-01 | 100.0% | 78.5% |
| 3387149 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.57 | 46.0 | 4.11e-01 | 100.0% | 60.6% |
| 4228350 | 320.1.1.1 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain › R3H | 0.57 | 30.0 | 3.80e-01 | 98.3% | 90.8% |
| 3283851 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.53 | 46.0 | 4.45e-01 | 100.0% | 86.2% |
| 5031599 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.50 | 38.0 | 3.68e-01 | 99.1% | 69.6% |
D2
medium
residues 121-201
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3mekA02 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 33.0 | 4.03e-01 | 87.7% | 73.5% |
| 4isbA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.60 | 40.0 | 2.58e-01 | 70.4% | 29.7% |
| 1aj5A00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.59 | 41.0 | 3.22e-01 | 71.6% | 75.1% |
| 3cw9A01 | 3.40.50.980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 40.0 | 3.13e-01 | 71.6% | 72.4% |
| 2ex3B01 | 6.10.250.960 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.56 | 38.0 | 3.93e-01 | 70.4% | 92.1% |
| 2a2cA03 | 1.20.1440.340 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.53 | 41.0 | 3.40e-01 | 81.5% | 59.4% |
| 1vw4501 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.53 | 46.0 | 3.32e-01 | 97.5% | 83.8% |
| 2xzmZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.51 | 38.0 | 3.62e-01 | 100.0% | 67.0% |
| 3v7iA02 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.50 | 39.0 | 3.19e-01 | 82.7% | 84.4% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3723089 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.60 | 42.0 | 3.29e-01 | 74.1% | 74.3% |
| 4618641 | 183.1.1.0 ↗ | alpha duplicates or obligate multimers › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain › Iron-dependent repressor protein, dimerization domain | 0.60 | 47.0 | 3.84e-01 | 96.3% | 46.9% |
| 3728152 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.58 | 41.0 | 3.25e-01 | 74.1% | 79.4% |
| 5001480 | 101.1.2.652 ↗ | alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C | 0.57 | 45.0 | 3.79e-01 | 95.1% | 49.3% |
| 3687797 | 323.1.1.0 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases | 0.57 | 39.0 | 3.08e-01 | 72.8% | 73.3% |
| 5077611 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 45.0 | 3.90e-01 | 86.4% | 71.2% |
| 3286186 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 39.0 | 3.15e-01 | 71.6% | 80.0% |
| 5074594 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 43.0 | 3.57e-01 | 87.7% | 92.9% |
| 4030274 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.50 | 42.0 | 3.29e-01 | 90.1% | 94.2% |
| 3400140 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.50 | 44.0 | 2.96e-01 | 96.3% | 30.2% |