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IMGVR_UViG_3300028626_000223-3300028626-Ga0302244_100071417
Arc-VirIMGVR_UViG_3300028626_000223-3300028626-Ga0302244_100071417
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 17-140
Domain cluster:
rep: MT724048.1__QMP81551.1__SAP3_42__00042__D317-458
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1xe1A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 50.0 | 5.72e-01 | 82.3% | 98.9% |
| 4b43A03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 44.0 | 4.63e-01 | 88.7% | 74.8% |
| 4tkoB01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.64 | 44.0 | 4.94e-01 | 70.2% | 100.0% |
| 1g7sA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 46.0 | 4.97e-01 | 88.7% | 91.7% |
| 1v0fB03 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.55 | 36.0 | 4.20e-01 | 85.5% | 97.6% |
| 1wzlA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 30.0 | 3.46e-01 | 89.5% | 77.1% |
| 5gxuB01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.53 | 43.0 | 4.40e-01 | 88.7% | 93.4% |
| 2c9aA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.89e-01 | 91.9% | 87.6% |
| 8owfA01 | 2.60.40.290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 35.0 | 3.72e-01 | 71.8% | 97.3% |
| 2ls6A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 34.0 | 3.17e-01 | 73.4% | 51.8% |
| 3qgaA02 | 2.10.150.10 | Mainly Beta › Ribbon › Urease, subunit B › Urease, beta subunit | 0.50 | 30.0 | 3.05e-01 | 82.3% | 57.4% |
ECOD (52)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5029965 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 47.0 | 5.69e-01 | 86.3% | 100.0% |
| 3604862 | 7526.1.1.2 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › EF-G_D2 | 0.69 | 47.0 | 3.69e-01 | 89.5% | 35.8% |
| 3710481 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.68 | 46.0 | 5.23e-01 | 82.3% | 93.3% |
| 3991400 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.68 | 46.0 | 3.54e-01 | 87.1% | 32.7% |
| 4204869 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.67 | 45.0 | 4.85e-01 | 87.1% | 81.0% |
| 3962889 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.67 | 47.0 | 5.15e-01 | 88.7% | 89.0% |
| 3194678 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 47.0 | 5.13e-01 | 90.3% | 86.7% |
| 4203595 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.66 | 46.0 | 4.52e-01 | 89.5% | 66.9% |
| 4934153 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.66 | 45.0 | 5.05e-01 | 88.7% | 90.5% |
| 4395103 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 46.0 | 5.29e-01 | 83.1% | 97.8% |
| 4525954 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.66 | 49.0 | 5.39e-01 | 90.3% | 95.0% |
| 3483799 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.66 | 47.0 | 4.89e-01 | 89.5% | 79.1% |
| 4638448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.66 | 45.0 | 4.84e-01 | 87.1% | 81.9% |
| None | — | 0.66 | 45.0 | 3.60e-01 | 88.7% | 37.4% | |
| 4166205 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.66 | 45.0 | 4.74e-01 | 88.7% | 78.2% |
| 5005126 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.65 | 46.0 | 5.37e-01 | 89.5% | 100.0% |
| 4061072 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 48.0 | 4.84e-01 | 89.5% | 76.0% |
| 4155389 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 48.0 | 4.99e-01 | 89.5% | 82.6% |
| 5058339 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.65 | 45.0 | 5.11e-01 | 87.9% | 92.6% |
| 4048432 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.65 | 45.0 | 3.62e-01 | 89.5% | 37.8% |
| 5079595 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 45.0 | 5.01e-01 | 89.5% | 91.6% |
| 3275318 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.65 | 47.0 | 4.50e-01 | 89.5% | 65.7% |
| 4944211 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 46.0 | 5.08e-01 | 88.7% | 90.0% |
| 4955533 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 44.0 | 4.70e-01 | 89.5% | 81.0% |
| 1421337 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.65 | 46.0 | 5.15e-01 | 88.7% | 93.8% |
| 4215826 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.65 | 47.0 | 5.01e-01 | 88.7% | 85.5% |
| 4492784 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 48.0 | 4.88e-01 | 89.5% | 79.2% |
| 4159958 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 46.0 | 4.89e-01 | 87.1% | 83.6% |
| 4491659 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 44.0 | 4.59e-01 | 87.1% | 75.7% |
| 4258762 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 47.0 | 4.85e-01 | 89.5% | 79.2% |
| 4027927 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.64 | 47.0 | 5.32e-01 | 89.5% | 100.0% |
| 4496370 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 48.0 | 4.80e-01 | 89.5% | 76.8% |
| 4529321 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 48.0 | 4.96e-01 | 89.5% | 83.5% |
| 3586640 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.64 | 47.0 | 3.53e-01 | 90.3% | 33.0% |
| 4270573 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.64 | 46.0 | 4.89e-01 | 88.7% | 84.5% |
| 4382801 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.64 | 46.0 | 4.41e-01 | 92.7% | 64.1% |
| 3259435 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 41.0 | 4.80e-01 | 91.1% | 98.8% |
| 4114061 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.63 | 45.0 | 4.86e-01 | 87.9% | 86.7% |
| 4152219 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.63 | 47.0 | 4.76e-01 | 89.5% | 77.6% |
| 4581061 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.63 | 46.0 | 4.92e-01 | 89.5% | 87.3% |
| 4428249 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 43.0 | 4.15e-01 | 70.2% | 77.9% |
| 3476360 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.62 | 45.0 | 4.79e-01 | 90.3% | 84.5% |
| 4045917 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.62 | 43.0 | 4.46e-01 | 88.7% | 75.7% |
| 5000358 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.62 | 42.0 | 4.40e-01 | 88.7% | 75.7% |
| 4027014 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.61 | 46.0 | 4.77e-01 | 88.7% | 85.2% |
| 4655249 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.60 | 48.0 | 4.69e-01 | 84.7% | 77.0% |
| 4402448 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.59 | 47.0 | 4.77e-01 | 88.7% | 85.8% |
| 4439182 | 1.1.7.9 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c | 0.59 | 45.0 | 4.56e-01 | 89.5% | 81.7% |
| 3171334 | 1.1.7.102 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 | 0.58 | 44.0 | 4.69e-01 | 80.6% | 100.0% |
| 4664583 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.57 | 46.0 | 4.46e-01 | 86.3% | 77.0% |
| 3598687 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.57 | 40.0 | 3.74e-01 | 74.2% | 83.7% |
| 3286458 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.53 | 44.0 | 4.45e-01 | 90.3% | 97.6% |