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IMGVR_UViG_3300028628_000030-3300028628-Ga0302249_10006958

Arc-Vir

IMGVR_UViG_3300028628_000030-3300028628-Ga0302249_10006958

Identity

Kingdom:
archaea

Quality

90.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-65
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7kfuC01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.80 54.0 5.02e-01 90.2% 57.3%
7mi4A02 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.75 52.0 4.84e-01 88.5% 59.5%
4n06A01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.74 51.0 4.63e-01 91.8% 53.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.71 51.0 4.32e-01 100.0% 46.1%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.65 49.0 4.81e-01 95.1% 75.8%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.65 48.0 4.87e-01 98.4% 80.6%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.63 43.0 4.05e-01 70.5% 68.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.62 51.0 4.73e-01 100.0% 72.7%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 44.0 3.30e-01 83.6% 91.1%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.29e-01 80.3% 81.1%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.57 41.0 3.56e-01 77.0% 86.6%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.57 46.0 3.38e-01 88.5% 61.3%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 47.0 3.47e-01 91.8% 71.5%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.56 45.0 2.81e-01 86.9% 34.0%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 48.0 4.31e-01 98.4% 83.0%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.56 46.0 3.95e-01 98.4% 77.8%
1aqtA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.56 46.0 4.17e-01 95.1% 86.4%
2wsuB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 49.0 3.71e-01 100.0% 76.4%
5vxzA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.40e-01 100.0% 61.7%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 46.0 4.44e-01 95.1% 94.3%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.54 38.0 3.91e-01 96.7% 79.7%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 38.0 3.76e-01 86.9% 73.4%
2khjA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.43e-01 80.3% 53.9%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 45.0 4.39e-01 98.4% 94.1%
3u1xA00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.52 45.0 3.13e-01 100.0% 47.9%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 42.0 3.21e-01 100.0% 46.5%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 2.75e-01 82.0% 72.4%
2fg9A01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 38.0 2.89e-01 100.0% 31.4%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 44.0 3.65e-01 98.4% 97.4%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.51 43.0 4.00e-01 100.0% 83.7%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.50 42.0 4.20e-01 98.4% 96.7%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.50 39.0 3.46e-01 100.0% 57.0%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.50 41.0 3.32e-01 100.0% 58.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 35.0 3.68e-01 98.4% 83.9%
1gbgA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.09e-01 100.0% 58.9%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969500 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 55.0 4.70e-01 98.4% 50.5%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 54.0 5.61e-01 100.0% 90.9%
5034040 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.47e-01 100.0% 90.9%
4432348 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.69 51.0 4.96e-01 100.0% 72.1%
5000741 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 52.0 5.10e-01 100.0% 76.9%
5080336 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 5.24e-01 100.0% 81.2%
4941512 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 49.0 4.72e-01 100.0% 67.1%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.22e-01 100.0% 85.0%
4947234 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.67 52.0 3.21e-01 83.6% 42.3%
3290899 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.66 50.0 4.82e-01 100.0% 71.4%
3987498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.65e-01 100.0% 61.2%
3387119 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.66 51.0 4.52e-01 100.0% 57.8%
4953054 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.53e-01 100.0% 66.7%
4985969 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 48.0 4.87e-01 100.0% 85.0%
3279470 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 49.0 4.39e-01 100.0% 58.9%
4514731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.22e-01 100.0% 58.8%
4987025 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.62 54.0 3.44e-01 95.1% 73.3%
4347999 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.61 42.0 4.19e-01 93.4% 67.7%
5067289 243.6.1.9 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › TGT_C2 0.60 42.0 3.84e-01 72.1% 73.8%
4432457 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.60 45.0 4.34e-01 100.0% 72.9%
3873942 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.25e-01 77.0% 95.4%
5028741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.48e-01 96.7% 89.1%
4028176 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 52.0 4.32e-01 100.0% 63.6%
3221103 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.29e-01 100.0% 73.3%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.42e-01 95.1% 87.3%
3628251 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.58 35.0 4.06e-01 83.6% 92.5%
3673317 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.21e-01 93.4% 83.6%
3220403 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 49.0 4.21e-01 100.0% 74.3%
3964733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 4.32e-01 95.1% 87.3%
4975714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 38.0 3.99e-01 91.8% 80.0%
4882420 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.56 39.0 4.16e-01 90.2% 86.3%
4957336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 47.0 2.90e-01 98.4% 16.5%
4948250 4.1.1.301 ↗ beta barrels › SH3 › SH3 › SH3 › MJ1316 0.55 43.0 4.26e-01 86.9% 92.3%
4862202 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.54 38.0 4.11e-01 83.6% 91.8%
4995901 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.13e-01 98.4% 89.1%
1545880 4.1.1.278 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_YKFC_2nd 0.53 46.0 4.27e-01 100.0% 85.0%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.53 39.0 2.99e-01 100.0% 32.7%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.53 39.0 3.79e-01 98.4% 71.0%
4025326 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.68e-01 91.8% 67.1%
2663669 4216.1.1.2 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › ChuX_HutX 0.53 44.0 3.40e-01 100.0% 48.8%
3967527 4216.1.1.1 ↗ a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS 0.53 44.0 3.33e-01 100.0% 47.3%
540 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.53 37.0 3.96e-01 96.7% 95.8%
3781209 4.1.1.308 ↗ beta barrels › SH3 › SH3 › SH3 › PF31073 0.52 43.0 3.76e-01 96.7% 65.0%
3480350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.52 41.0 4.08e-01 88.5% 90.8%
3801791 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.78e-01 82.0% 83.1%
4890232 5.1.4.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.52 41.0 2.39e-01 91.8% 31.0%
5060347 101.8.1.4 ↗ alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f 0.51 39.0 2.36e-01 85.2% 17.2%
3918340 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.51 40.0 3.89e-01 86.9% 85.7%
3679761 5.1.5.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Nup88 0.51 40.0 2.39e-01 93.4% 13.9%
3764432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.62e-01 85.2% 72.3%
3833030 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.51 38.0 3.02e-01 82.0% 37.0%
3815480 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.83e-01 85.2% 86.2%
4874733 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.80e-01 100.0% 90.7%
4950573 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.50 42.0 4.06e-01 91.8% 95.7%
3246415 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 45.0 3.56e-01 100.0% 88.0%
3231154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 43.0 3.98e-01 100.0% 82.5%