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IMGVR_UViG_3300028633_000056-3300028633-Ga0302236_100126241
Arc-VirIMGVR_UViG_3300028633_000056-3300028633-Ga0302236_100126241
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-100
Domain cluster:
rep: KU253712.1__AMB18629.1__Eldridge_046__00046__D3-82
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4z9cB00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.66 | 43.0 | 4.02e-01 | 95.7% | 53.0% |
| 2xssA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 40.0 | 3.34e-01 | 90.2% | 40.4% |
| 5b3pA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.56 | 41.0 | 3.60e-01 | 96.7% | 52.2% |
| 2pnqA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 42.0 | 2.78e-01 | 80.4% | 46.9% |
| 4e9oX00 | 3.10.200.10 | Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase | 0.52 | 47.0 | 3.51e-01 | 100.0% | 50.4% |
| 3ko2A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 43.0 | 3.65e-01 | 94.6% | 75.2% |
| 4h0pA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 40.0 | 3.07e-01 | 93.5% | 37.7% |
| 3qcpA01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 43.0 | 3.59e-01 | 96.7% | 74.9% |
| 3ix3A00 | 3.30.450.80 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain | 0.50 | 36.0 | 3.04e-01 | 92.4% | 42.9% |
| 3e54A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 42.0 | 3.60e-01 | 95.7% | 79.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3215607 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 42.0 | 3.41e-01 | 78.3% | 68.8% |
| 3879303 | 330.1.1.5 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM | 0.55 | 34.0 | 3.59e-01 | 91.3% | 71.2% |
| 4015296 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 37.0 | 4.12e-01 | 81.5% | 92.9% |
| 4020068 | 2485.1.1.19 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › L51_S25_CI-B8 | 0.53 | 44.0 | 3.68e-01 | 93.5% | 68.2% |
D2
high
residues 233-297
Domain cluster:
rep: LacPavin_0818_WC40_scaffold_269347_prodigal-single.1__X__X__00075__D210-274
D3
medium
residues 103-156
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fwrA01 | 3.40.1170.30 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › | 0.63 | 50.0 | 4.95e-01 | 100.0% | 84.2% |
| 3d01E00 | 3.30.1330.40 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › RutC-like | 0.60 | 43.0 | 3.16e-01 | 77.8% | 83.2% |
| 2jubA02 | 2.20.25.370 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Ipi1, C-terminal domain | 0.57 | 39.0 | 4.34e-01 | 98.1% | 97.4% |
| 5b6iA02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.57 | 42.0 | 3.40e-01 | 79.6% | 100.0% |
| 1svvB02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.56 | 46.0 | 3.99e-01 | 100.0% | 72.8% |
| 1w23A02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.53 | 42.0 | 3.65e-01 | 100.0% | 74.8% |
| 2kpiA01 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.53 | 32.0 | 3.63e-01 | 96.3% | 82.1% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.53 | 39.0 | 3.24e-01 | 87.0% | 82.5% |
| 3igrA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 37.0 | 2.70e-01 | 81.5% | 42.1% |
| 3ifuA01 | 4.10.80.390 | Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › | 0.50 | 27.0 | 2.85e-01 | 98.1% | 51.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4942580 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.66 | 57.0 | 4.93e-01 | 98.1% | 75.3% |
| 4983245 | 242.2.1.2 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N | 0.61 | 51.0 | 4.64e-01 | 98.1% | 70.7% |
| 5044846 | 2002.1.1.152 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 | 0.58 | 46.0 | 2.75e-01 | 90.7% | 10.9% |
| 4194607 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.58 | 48.0 | 4.50e-01 | 100.0% | 90.0% |
| 3994712 | 3016.1.1.10 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › GDC-P | 0.57 | 47.0 | 4.00e-01 | 100.0% | 63.0% |
| 3969491 | 3016.1.1.0 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases | 0.56 | 45.0 | 4.06e-01 | 100.0% | 89.4% |
| 5052109 | 4955.1.1.0 ↗ | a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit | 0.54 | 46.0 | 4.03e-01 | 100.0% | 90.6% |
| None | — | 0.54 | 42.0 | 2.61e-01 | 100.0% | 26.0% | |
| 5075433 | 205.1.1.16 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_7 | 0.54 | 40.0 | 3.78e-01 | 88.9% | 82.7% |
| 3171025 | 207.1.1.116 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_FBXL15 | 0.53 | 42.0 | 2.91e-01 | 100.0% | 40.4% |
| 4011045 | 242.2.1.6 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_end_N2 | 0.52 | 40.0 | 3.73e-01 | 88.9% | 71.2% |
| 4284793 | 212.1.1.23 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_E_G | 0.51 | 36.0 | 3.12e-01 | 77.8% | 57.9% |
| 5057619 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.51 | 35.0 | 2.44e-01 | 77.8% | 35.7% |
| 3257395 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 41.0 | 3.75e-01 | 100.0% | 68.8% |
D4
medium
residues 157-228
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgsB01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.56 | 39.0 | 3.60e-01 | 75.0% | 59.1% |
| 2b9wA02 | 1.10.405.20 | Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › | 0.55 | 36.0 | 3.16e-01 | 95.8% | 41.5% |
| 3cqyB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 46.0 | 3.51e-01 | 100.0% | 94.0% |
| 2au3A04 | 1.20.50.30 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › | 0.53 | 34.0 | 3.68e-01 | 98.6% | 85.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027500 | 213.1.1.14 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_16 | 0.74 | 53.0 | 3.92e-01 | 100.0% | 30.0% |
| 5010916 | 191.1.1.0 ↗ | alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain | 0.61 | 53.0 | 4.41e-01 | 100.0% | 74.1% |
| 3654648 | 103.9.1.0 ↗ | alpha arrays › RuvA-C › RanGAP2 N-terminal domain › RanGAP2 N-terminal domain | 0.58 | 41.0 | 4.20e-01 | 75.0% | 82.9% |
| 4159522 | 3724.1.1.0 ↗ | alpha arrays › Phosphoinositide phosphatase C-terminal helical domain › Phosphoinositide phosphatase C-terminal helical domain › Phosphoinositide phosphatase C-terminal helical domain | 0.55 | 38.0 | 3.35e-01 | 70.8% | 64.8% |
| 4947390 | 7510.1.1.1 ↗ | a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh | 0.55 | 38.0 | 2.94e-01 | 73.6% | 53.7% |
| 3785604 | 109.4.1.1286 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8, TPR_12 | 0.53 | 40.0 | 2.59e-01 | 91.7% | 17.4% |
| 3310361 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.51 | 40.0 | 2.97e-01 | 88.9% | 61.0% |