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IMGVR_UViG_3300028635_000005-3300028635-Ga0302245_100013873

Arc-Vir

IMGVR_UViG_3300028635_000005-3300028635-Ga0302245_100013873

Quality

93.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-122
PDB
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5bxyA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.86 59.0 5.03e-01 100.0% 46.8%
3v97A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.85 58.0 4.80e-01 100.0% 42.6%
2okcA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.84 68.0 4.67e-01 100.0% 28.1%
3k0bA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.84 63.0 5.13e-01 100.0% 44.9%
3ufbA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.84 67.0 4.53e-01 100.0% 26.2%
3ndiA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.83 54.0 4.19e-01 100.0% 33.2%
4kdcA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.83 58.0 4.38e-01 100.0% 33.6%
7f8aA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.80 56.0 4.62e-01 100.0% 42.4%
2ar0A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.76 67.0 4.58e-01 100.0% 29.1%
1uwvA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.75 54.0 4.22e-01 100.0% 36.7%
2pftA00 1.20.1280.170 Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 0.70 52.0 3.30e-01 78.4% 31.8%
3bt7A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.69 50.0 3.85e-01 100.0% 33.9%
4kv7A02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.67 47.0 4.13e-01 100.0% 47.8%
2qtlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.66 50.0 4.39e-01 80.4% 98.7%
2bpoA04 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.65 50.0 4.29e-01 81.4% 95.1%
4fsdA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 58.0 4.36e-01 100.0% 41.9%
1af7A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 59.0 4.72e-01 100.0% 59.8%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.64 49.0 4.22e-01 81.4% 93.8%
1gq2A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.63 55.0 3.84e-01 100.0% 31.3%
2x6qA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.63 43.0 3.47e-01 82.4% 36.0%
6ljaA01 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.62 49.0 3.42e-01 86.3% 35.3%
2vy9A00 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.60 45.0 4.40e-01 99.0% 72.8%
8fazD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 46.0 3.56e-01 96.1% 37.2%
3h20A04 1.10.1240.50 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.58 44.0 4.63e-01 100.0% 92.1%
4d49A00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.58 48.0 3.71e-01 92.2% 59.7%
3qkiA02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.57 52.0 4.55e-01 100.0% 86.8%
4rg6A03 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 47.0 4.35e-01 91.2% 91.0%
2cvhA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 44.0 3.47e-01 84.3% 51.4%
1oj6A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 4.09e-01 100.0% 61.9%
1tu9A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 45.0 4.15e-01 100.0% 67.9%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 46.0 4.09e-01 100.0% 64.5%
6q3wD01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.55 45.0 3.77e-01 99.0% 50.3%
3nb0B02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 42.0 3.17e-01 81.4% 34.4%
1yhuB00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 45.0 4.02e-01 100.0% 63.2%
1binA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 47.0 4.18e-01 100.0% 66.4%
5z87A01 3.20.20.300 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain 0.54 45.0 3.15e-01 93.1% 39.0%
3ubcA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 45.0 4.14e-01 100.0% 70.2%
3sqgB02 3.30.70.470 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 39.0 3.47e-01 100.0% 54.5%
1cg5B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 45.0 4.03e-01 100.0% 66.0%
2e2eA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 42.0 3.76e-01 91.2% 62.3%
1hlbA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 43.0 3.70e-01 100.0% 58.6%
2zs0A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.51 44.0 3.98e-01 99.0% 69.3%
3f4aA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.51 38.0 3.46e-01 81.4% 65.3%
3ewaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 42.0 3.29e-01 96.1% 53.4%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4580141 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.94 90.0 6.58e-01 100.0% 47.7%
4997523 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.90 85.0 5.38e-01 100.0% 40.7%
4999846 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.89 72.0 5.10e-01 100.0% 31.3%
5025385 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.87 70.0 4.98e-01 100.0% 31.9%
5053796 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.86 68.0 4.64e-01 100.0% 26.2%
4336036 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.86 82.0 5.44e-01 100.0% 32.8%
5076056 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.85 81.0 5.60e-01 100.0% 38.6%
4563233 2003.1.5.160 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase, Eco57I 0.85 68.0 4.57e-01 100.0% 25.8%
4973451 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.84 75.0 4.67e-01 100.0% 20.0%
4941122 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.84 80.0 5.34e-01 100.0% 38.8%
4926848 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.84 75.0 5.13e-01 100.0% 30.5%
4984681 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.84 64.0 5.61e-01 100.0% 55.9%
5032412 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.84 64.0 4.39e-01 100.0% 25.3%
4974764 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.84 80.0 5.34e-01 100.0% 34.0%
5049452 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.84 80.0 5.25e-01 100.0% 33.1%
None 0.84 67.0 4.62e-01 100.0% 28.2%
4946359 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.83 79.0 5.44e-01 100.0% 40.0%
3838861 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.83 78.0 4.99e-01 100.0% 27.9%
4979845 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.83 79.0 5.35e-01 100.0% 34.3%
4969177 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.82 77.0 5.26e-01 100.0% 35.9%
4999708 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.81 76.0 4.99e-01 100.0% 39.5%
5012793 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.80 76.0 5.11e-01 100.0% 32.0%
3838952 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.80 75.0 5.04e-01 100.0% 30.0%
4418049 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.79 75.0 4.93e-01 100.0% 32.2%
4932967 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.79 57.0 3.97e-01 100.0% 25.8%
4117483 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.79 68.0 5.66e-01 100.0% 56.4%
5045466 2003.1.5.62 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.78 74.0 4.74e-01 100.0% 29.2%
5075605 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.78 55.0 4.02e-01 100.0% 28.8%
4998596 2003.1.5.22 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_Mtase 0.75 71.0 4.85e-01 100.0% 32.9%
None 0.70 66.0 4.94e-01 100.0% 52.6%
5046722 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.70 64.0 4.70e-01 100.0% 40.0%
4380130 2003.1.5.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020 0.69 65.0 4.86e-01 100.0% 50.9%
5021923 2496.1.1.15 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like › DUF4325 0.68 52.0 5.34e-01 79.4% 86.3%
2858908 170.1.1.4 alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C › Arc_C 0.68 34.0 4.51e-01 80.4% 92.5%
3705474 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 52.0 3.92e-01 84.3% 49.6%
3958236 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.66 57.0 3.60e-01 96.1% 28.8%
3716668 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.66 54.0 3.55e-01 90.2% 49.1%
4249478 2003.1.5.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR 0.65 60.0 4.67e-01 100.0% 59.6%
None 0.64 59.0 4.73e-01 100.0% 62.6%
4929028 2003.1.5.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR 0.64 59.0 4.68e-01 100.0% 60.0%
3392158 2003.1.1.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M 0.64 55.0 4.46e-01 100.0% 50.8%
4102070 2003.1.1.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M 0.64 55.0 3.91e-01 100.0% 33.0%
3885448 2003.1.1.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M 0.63 54.0 4.15e-01 100.0% 41.8%
3968796 2003.1.5.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › CheR 0.63 58.0 4.61e-01 100.0% 60.0%
4950790 2004.1.1.49 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase 0.62 51.0 2.99e-01 99.0% 10.4%
3943167 2003.1.1.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Mannitol_dh 0.61 53.0 3.99e-01 99.0% 58.5%
4113259 2004.1.1.470 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C 0.61 53.0 3.04e-01 98.0% 10.0%
4282858 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 52.0 2.95e-01 95.1% 8.0%
3968799 2003.1.1.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M 0.60 56.0 3.92e-01 100.0% 35.1%
3740349 2003.1.1.49 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Malic_M 0.60 56.0 4.43e-01 100.0% 52.3%
None 0.60 51.0 3.23e-01 96.1% 28.8%
3584462 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 48.0 3.93e-01 91.2% 55.6%
4520419 2004.1.1.470 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD, UvrD-helicase, UvrD_C 0.59 52.0 3.03e-01 99.0% 10.4%
4302341 2004.1.1.363 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.58 51.0 2.97e-01 99.0% 10.5%
3988343 2004.1.1.363 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase+UvrD_C 0.58 51.0 2.95e-01 99.0% 10.0%
5019263 4953.1.1.0 beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.57 42.0 4.25e-01 75.5% 91.0%
3620970 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 48.0 3.64e-01 92.2% 41.2%
5031774 2002.1.1.134 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 0.57 48.0 3.53e-01 96.1% 39.3%
4885968 2008.1.1.203 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UvrD-helicase, AAA_19, UvrD_C 0.57 50.0 2.90e-01 99.0% 40.1%
4472619 2004.1.1.483 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD-helicase, AAA_19, UvrD_C 0.57 50.0 2.91e-01 99.0% 81.9%
4490768 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.56 47.0 2.69e-01 95.1% 8.5%
None 0.56 47.0 2.75e-01 95.1% 10.9%
None 0.56 47.0 2.67e-01 95.1% 8.5%
4410099 106.1.1.1 alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.55 45.0 4.06e-01 100.0% 64.3%
4551619 2003.1.5.259 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › UPF0020, Cons_hypoth95, Methyltrans_SAM 0.54 45.0 2.91e-01 94.1% 18.7%
3941077 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.52 43.0 3.91e-01 100.0% 65.0%
3100057 3236.1.1.2 alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › SBF 0.50 44.0 3.20e-01 100.0% 79.4%
3388404 7523.1.1.30 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_11 0.50 32.0 3.20e-01 100.0% 61.0%