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IMGVR_UViG_3300028644_000039-3300028644-Ga0302238_100089738

Arc-Vir

IMGVR_UViG_3300028644_000039-3300028644-Ga0302238_100089738

Identity

Kingdom:
archaea

Quality

82.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-131
PDB
Domain cluster: rep: SRR1747065_scaffold_5_prodigal-single.1__X__X__00153__D1-142
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8fazD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 71.0 5.76e-01 100.0% 55.0%
3ewaA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 66.0 5.23e-01 100.0% 48.6%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 64.0 4.98e-01 100.0% 47.8%
1c2yA00 3.40.50.960 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Lumazine/riboflavin synthase 0.68 43.0 4.13e-01 81.7% 54.2%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.68 41.0 3.79e-01 84.0% 47.8%
1o94A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.64 39.0 3.57e-01 71.0% 45.8%
4rxtA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.60 45.0 4.23e-01 100.0% 63.9%
3gycA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.59 54.0 3.84e-01 100.0% 74.8%
7wmzC01 3.20.20.220 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › 0.59 52.0 4.06e-01 97.7% 84.8%
6az0A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 48.0 4.38e-01 99.2% 67.1%
3vdhA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 52.0 3.83e-01 97.7% 69.4%
2v3aA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 35.0 3.23e-01 71.8% 45.5%
2hy1A00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.57 42.0 3.52e-01 93.9% 44.5%
3m6nA01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.57 49.0 4.17e-01 93.1% 86.3%
1knqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 35.0 3.23e-01 93.1% 46.8%
7bobA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.56 51.0 3.73e-01 100.0% 82.3%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 35.0 3.37e-01 100.0% 54.7%
1nqkA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.55 49.0 3.67e-01 100.0% 54.8%
1hjxA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.55 49.0 3.80e-01 99.2% 85.6%
2kw6A00 6.10.140.1300 Special › Helix non-globular › Helix Hairpins › 0.54 25.0 3.28e-01 81.7% 81.5%
1ur4A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 48.0 3.48e-01 99.2% 59.6%
3amcA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 48.0 3.71e-01 100.0% 73.7%
1zkdA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.81e-01 100.0% 62.8%
1r6xA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 40.0 3.48e-01 87.8% 49.8%
1z7dA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.53 44.0 3.70e-01 99.2% 52.7%
3nksA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 37.0 2.53e-01 71.8% 52.7%
3ke3A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.52 45.0 3.62e-01 100.0% 47.5%
3zidB00 3.40.50.1440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tubulin/FtsZ, GTPase domain 0.51 45.0 3.33e-01 95.4% 84.2%
4w8iB02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.51 44.0 3.61e-01 100.0% 51.5%
2pljA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.51 46.0 3.85e-01 100.0% 59.8%
2efjA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 46.0 3.90e-01 100.0% 67.3%
1gaxA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 37.0 2.83e-01 77.1% 34.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.90 80.0 6.06e-01 100.0% 44.4%
None — 0.90 79.0 6.00e-01 100.0% 43.6%
4485228 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.89 79.0 5.54e-01 100.0% 33.8%
None — 0.89 79.0 6.08e-01 100.0% 46.2%
None — 0.89 79.0 5.90e-01 100.0% 42.1%
4452602 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.89 79.0 5.58e-01 100.0% 34.8%
None — 0.89 79.0 6.03e-01 100.0% 45.3%
None — 0.89 79.0 6.03e-01 100.0% 45.3%
4450485 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.88 69.0 6.24e-01 89.3% 62.4%
3382308 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.88 80.0 5.86e-01 100.0% 41.0%
3830575 2004.1.1.21 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RecA 0.87 79.0 5.76e-01 100.0% 39.7%
None — 0.87 79.0 5.77e-01 100.0% 40.3%
None — 0.83 79.0 5.92e-01 100.0% 48.4%
4417234 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.81 68.0 5.53e-01 100.0% 50.4%
5025002 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.80 67.0 5.48e-01 100.0% 50.7%
5056137 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.80 66.0 5.38e-01 100.0% 49.4%
5046110 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.78 68.0 5.43e-01 100.0% 49.8%
4931190 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.78 65.0 5.49e-01 100.0% 54.8%
4994819 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.78 70.0 5.57e-01 100.0% 50.2%
4974886 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.76 66.0 5.44e-01 100.0% 54.1%
3601734 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.76 72.0 5.36e-01 100.0% 56.2%
4970710 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.76 66.0 5.47e-01 100.0% 55.0%
5052708 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.76 69.0 5.70e-01 100.0% 56.8%
4946309 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.75 69.0 5.43e-01 100.0% 49.4%
4171287 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.75 65.0 5.30e-01 100.0% 52.2%
None — 0.75 67.0 5.30e-01 100.0% 49.0%
4982952 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.75 67.0 5.50e-01 100.0% 55.8%
5001115 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.74 67.0 5.25e-01 100.0% 48.5%
5044159 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.74 64.0 5.39e-01 100.0% 57.1%
3613715 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 69.0 4.96e-01 100.0% 47.1%
4158084 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.74 66.0 5.39e-01 100.0% 55.1%
3457573 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.72 67.0 5.13e-01 100.0% 50.7%
None — 0.72 67.0 5.13e-01 100.0% 50.7%
5076447 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.72 65.0 5.10e-01 100.0% 47.9%
None — 0.72 67.0 5.18e-01 100.0% 52.7%
4986231 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.72 57.0 5.50e-01 91.6% 73.8%
3356924 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 65.0 4.91e-01 100.0% 55.8%
3405400 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.69 64.0 5.36e-01 100.0% 60.0%
3822782 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 63.0 4.64e-01 100.0% 52.9%
3937962 2007.9.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain 0.60 45.0 4.24e-01 78.6% 75.6%
4962917 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.59 38.0 3.72e-01 72.5% 57.9%
3785303 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.59 55.0 4.90e-01 100.0% 92.1%
5049367 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 35.0 3.46e-01 99.2% 54.3%
5064853 2002.1.1.101 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.56 50.0 3.84e-01 99.2% 78.7%
4444241 2003.1.5.364 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › NAD_binding_4, Methyltransf_12 0.56 50.0 3.15e-01 100.0% 26.6%
3983363 2006.1.6.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA 0.56 50.0 4.36e-01 100.0% 66.2%
4600906 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 43.0 3.75e-01 82.4% 76.4%
3959544 2003.1.1.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Epimerase 0.55 48.0 4.18e-01 98.5% 76.9%
3628813 2005.1.1.4 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Asn_synthase 0.52 45.0 3.38e-01 93.1% 47.1%
4078167 2002.1.1.16 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.52 46.0 3.40e-01 100.0% 49.1%
3774119 2003.1.5.35 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › LCM 0.52 47.0 3.50e-01 100.0% 50.7%
3622561 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.52 47.0 4.37e-01 100.0% 86.7%
4166335 7573.1.1.1 ↗ a/b three-layered sandwiches › PRTase-like › PRTase-like › PRTase-like › Pribosyltran 0.52 35.0 3.27e-01 100.0% 53.9%
4935158 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.52 40.0 3.30e-01 80.9% 70.6%
3782911 2004.1.1.44 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PRK 0.51 38.0 3.28e-01 78.6% 98.2%
4952737 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 38.0 3.30e-01 78.6% 82.4%
4977476 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.51 43.0 3.41e-01 93.1% 48.4%
3644907 7590.1.1.2 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi 0.50 36.0 3.90e-01 95.4% 91.4%
5022262 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.50 38.0 3.35e-01 80.2% 85.0%
D2 high residues 133-183
PDB
Domain cluster: representative
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gq1A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 44.0 2.69e-01 100.0% 10.4%
3mcaB01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.63 41.0 3.34e-01 100.0% 35.4%
2p3hA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.63 50.0 4.08e-01 98.0% 46.9%
8gjaD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 52.0 3.30e-01 100.0% 18.5%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.61 46.0 3.77e-01 100.0% 44.2%
1yaxB00 3.30.450.140 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain 0.58 48.0 3.67e-01 100.0% 86.6%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 2.84e-01 96.1% 27.5%
4pzaB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.55 48.0 3.13e-01 98.0% 96.8%
1uw0A01 3.30.1740.10 Alpha Beta › 2-Layer Sandwich › first zn-finger domain of poly(adp-ribose) polymerase-1 › Zinc finger, PARP-type 0.54 45.0 3.71e-01 96.1% 51.0%
3mjqA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 38.0 3.05e-01 96.1% 36.4%
3lmlA01 3.10.450.690 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 47.0 3.57e-01 100.0% 43.0%
2be3B01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.53 41.0 3.15e-01 90.2% 38.5%
5os9A00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.51 44.0 3.45e-01 100.0% 94.8%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.04e-01 98.0% 40.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.51 36.0 3.21e-01 94.1% 50.6%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 42.0 3.15e-01 94.1% 42.7%
1fp5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 40.0 3.43e-01 100.0% 69.0%
4rx6D00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 39.0 3.23e-01 92.2% 73.8%
6jn7A01 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.50 43.0 3.02e-01 100.0% 32.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None — 0.74 54.0 3.41e-01 100.0% 15.7%
3488611 383.1.2.0 ↗ few secondary structure elements › Defensin-like › Defensin-related › Laterosporulin 0.63 44.0 4.80e-01 100.0% 92.5%
4596124 9.1.1.14 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeS 0.62 53.0 3.77e-01 100.0% 33.3%
3823729 5.1.4.222 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 0.60 39.0 2.35e-01 100.0% 9.4%
3396146 3338.2.1.1 ↗ a+b two layers › Fragilysin-3 prodomain-like › Type II secretion chaperone CpaB › Type II secretion chaperone CpaB › Pep_M12B_propep 0.57 47.0 3.76e-01 100.0% 53.9%
3628796 2008.1.1.146 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › EDRF1_N 0.57 50.0 3.07e-01 100.0% 72.3%
3696336 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 37.0 3.06e-01 100.0% 36.8%
4402835 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.56 48.0 3.07e-01 100.0% 21.1%
3689675 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.55 37.0 3.25e-01 98.0% 42.4%
1829536 6173.1.1.0 ↗ beta barrels › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 › V1/V2 domain in HIV gp120 0.54 41.0 4.16e-01 100.0% 88.2%
3467088 1.1.11.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.54 47.0 3.74e-01 100.0% 97.2%
4965857 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.54 45.0 4.10e-01 96.1% 79.7%
3926482 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.53 42.0 2.68e-01 100.0% 16.2%
3710518 10.13.1.1 ↗ beta sandwiches › jelly-roll › Calcium ATPase, transduction domain A › Calcium ATPase, transduction domain A › E1-E2_ATPase 0.53 39.0 2.74e-01 98.0% 22.1%
3884764 4309.1.1.0 ↗ a+b complex topology › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases › DUSP, domain in ubiquitin-specific proteases 0.52 42.0 3.20e-01 94.1% 74.1%
4276407 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.52 42.0 3.29e-01 100.0% 80.0%
3592296 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 40.0 3.19e-01 92.2% 44.2%
4011491 9.4.1.0 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains 0.51 41.0 3.20e-01 98.0% 94.1%
3174293 101.1.2.284 ↗ alpha arrays › HTH › HTH › winged helix domain › WAC_Acf1_DNA_bd 0.50 41.0 2.85e-01 100.0% 26.1%
D3 high residues 204-281
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1uxyA01 3.90.78.10 Alpha Beta › Alpha-Beta Complex › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 1 › UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 0.52 36.0 3.15e-01 74.4% 79.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3177556 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.53 40.0 2.54e-01 83.3% 47.7%
3283733 304.169.1.3 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WCX 0.52 35.0 3.53e-01 71.8% 81.2%
3750493 70.3.1.5 ↗ beta barrels › beta-clip › SET domain-like › SET domain-like › PRDM2_PR 0.51 45.0 3.35e-01 100.0% 41.0%
3206210 73.1.1.0 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain 0.50 40.0 3.27e-01 89.7% 93.7%