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IMGVR_UViG_3300028706_000674-3300028706-Ga0257115_10038861
Arc-VirIMGVR_UViG_3300028706_000674-3300028706-Ga0257115_10038861
Identity
- Kingdom:
- archaea
Quality
89.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-72
Domain cluster:
representative
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 43.0 | 3.83e-01 | 72.5% | 75.3% |
| 3hz4A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 53.0 | 4.08e-01 | 100.0% | 72.5% |
| 4s39A02 | 3.30.413.10 | Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 | 0.60 | 45.0 | 3.53e-01 | 100.0% | 36.2% |
| 4p25D01 | 2.40.510.10 | Mainly Beta › Beta Barrel › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Positive stranded ssRNA viruses | 0.59 | 49.0 | 3.42e-01 | 100.0% | 96.4% |
| 1w4vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 50.0 | 3.95e-01 | 100.0% | 80.0% |
| 3emxA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.57 | 47.0 | 3.60e-01 | 94.1% | 81.5% |
| 5w36B01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.57 | 39.0 | 2.97e-01 | 74.5% | 74.6% |
| 1pj5A04 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.57 | 47.0 | 3.66e-01 | 96.1% | 43.3% |
| 1eqnB01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.57 | 40.0 | 3.02e-01 | 74.5% | 77.8% |
| 2f2hA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.57 | 50.0 | 3.91e-01 | 100.0% | 57.8% |
| 4a7kA02 | 2.60.120.990 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 2.87e-01 | 100.0% | 96.0% |
| 2ft0A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.55 | 50.0 | 3.23e-01 | 100.0% | 38.7% |
| 2au3A02 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.55 | 38.0 | 2.92e-01 | 74.5% | 75.6% |
| 1nrkA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.54 | 43.0 | 3.75e-01 | 94.1% | 62.1% |
| 1yx2A02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.54 | 44.0 | 3.80e-01 | 96.1% | 60.5% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.54 | 48.0 | 3.73e-01 | 100.0% | 47.7% |
| 1lshA03 | 2.20.50.20 | Mainly Beta › Single Sheet › Outer Surface Protein A; domain 2 › Lipovitellin. Chain A, domain 3 | 0.53 | 46.0 | 3.77e-01 | 100.0% | 73.5% |
| 2qpvA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 38.0 | 2.97e-01 | 82.4% | 70.5% |
| 3a5pA00 | 2.60.200.70 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.53 | 39.0 | 3.18e-01 | 100.0% | 40.8% |
| 3gmvX00 | 3.10.450.730 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › BLIP domain | 0.52 | 47.0 | 3.29e-01 | 100.0% | 52.6% |
| 4go6B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.77e-01 | 86.3% | 95.0% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 47.0 | 3.88e-01 | 100.0% | 84.1% |
| 1ivyB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 40.0 | 2.36e-01 | 86.3% | 62.0% |
| 1inyA00 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.52 | 45.0 | 2.69e-01 | 100.0% | 21.6% |
| 3payB02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 45.0 | 3.35e-01 | 100.0% | 91.7% |
| 1pjxA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 41.0 | 2.62e-01 | 96.1% | 30.3% |
| 1ta9B01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.51 | 37.0 | 2.85e-01 | 86.3% | 34.9% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 42.0 | 3.32e-01 | 100.0% | 45.1% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 40.0 | 3.67e-01 | 100.0% | 79.7% |
| 3gf8A02 | 2.60.40.2090 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 43.0 | 3.29e-01 | 100.0% | 66.7% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3287702 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.83 | 74.0 | 5.63e-01 | 100.0% | 47.0% |
| 3976807 | 77.1.1.6 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 | 0.76 | 57.0 | 3.69e-01 | 100.0% | 18.6% |
| 3883938 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 51.0 | 3.98e-01 | 96.1% | 38.2% |
| 4431057 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.65 | 45.0 | 3.27e-01 | 84.3% | 26.2% |
| 3965839 | 77.1.1.6 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › MORN_2 | 0.64 | 59.0 | 4.06e-01 | 100.0% | 33.5% |
| 5081937 | 77.2.1.0 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N | 0.62 | 57.0 | 4.55e-01 | 100.0% | 53.7% |
| 3511263 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.62 | 43.0 | 3.55e-01 | 74.5% | 54.7% |
| 4016860 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.61 | 43.0 | 4.05e-01 | 94.1% | 60.0% |
| 4991637 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.61 | 48.0 | 3.13e-01 | 88.2% | 63.5% |
| 4000395 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.61 | 53.0 | 3.52e-01 | 98.0% | 26.2% |
| 4031136 | 6043.1.1.3 ↗ | a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N | 0.59 | 44.0 | 4.17e-01 | 80.4% | 85.0% |
| 5052072 | 331.2.1.0 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain | 0.58 | 41.0 | 3.27e-01 | 100.0% | 38.0% |
| 2066755 | 304.107.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T | 0.57 | 47.0 | 3.99e-01 | 96.1% | 57.8% |
| 4953685 | 244.4.1.2 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › NiFeSe_Hases | 0.57 | 47.0 | 3.98e-01 | 98.0% | 54.4% |
| 2162624 | 3894.1.1.1 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › Asp1 | 0.56 | 49.0 | 3.65e-01 | 100.0% | 39.7% |
| 3277842 | 4187.1.1.1 ↗ | a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › MerB | 0.56 | 48.0 | 4.60e-01 | 100.0% | 95.0% |
| 3589805 | 243.8.1.0 ↗ | a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein | 0.56 | 50.0 | 4.05e-01 | 100.0% | 73.7% |
| 1318713 | 3894.1.1.2 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD | 0.56 | 51.0 | 3.75e-01 | 100.0% | 41.3% |
| 4480625 | 304.107.1.0 ↗ | a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain | 0.56 | 45.0 | 3.35e-01 | 96.1% | 36.2% |
| 4079234 | 220.1.1.54 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_18 | 0.55 | 40.0 | 3.02e-01 | 80.4% | 89.3% |
| 4273033 | 3894.1.1.2 ↗ | beta meanders › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › O-GlcNAc transferase GtfA beta-meander domain › GtfA_EBD | 0.55 | 47.0 | 3.53e-01 | 100.0% | 39.2% |
| 2066850 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.55 | 48.0 | 3.92e-01 | 100.0% | 60.4% |
| 3993319 | 913.1.1.0 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) | 0.55 | 44.0 | 4.20e-01 | 90.2% | 83.3% |
| 4455196 | 246.1.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Carbon-nitrogen hydrolase › Carbon-nitrogen hydrolase › CN_hydrolase | 0.55 | 47.0 | 2.92e-01 | 100.0% | 31.6% |
| 4930614 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 42.0 | 3.74e-01 | 92.2% | 72.5% |
| 4182548 | 244.4.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit | 0.54 | 46.0 | 3.73e-01 | 98.0% | 50.5% |
| 3932040 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.53 | 44.0 | 3.88e-01 | 100.0% | 62.5% |
| 3583042 | 79.1.1.18 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Sarcoglycan_1 | 0.52 | 43.0 | 3.20e-01 | 100.0% | 35.0% |
| 863 | 9.4.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B | 0.51 | 42.0 | 3.31e-01 | 100.0% | 44.7% |
| 147742 | 5.1.3.23 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › SGL | 0.51 | 41.0 | 2.58e-01 | 96.1% | 29.1% |
| 185181 | 11.1.1.90 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IalB | 0.50 | 43.0 | 3.15e-01 | 100.0% | 35.2% |
D2
high
residues 83-152
Domain cluster:
rep: IMGVR_UViG_3300028706_000674-3300028706-Ga0257115_10038861__D22-72