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IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033140
Arc-VirIMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033140
Identity
- Kingdom:
- archaea
Quality
57.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 103-241
Domain cluster:
rep: IMGVR_UViG_3300020165_000035-3300020165-Ga0206125_1000061513__D67-129_146-204
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16724.12 best | T4-gp15_tss | 69.2 | 4.20e-19 | 99.3% | 41.1% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hudA01 | 3.30.2000.40 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser | 0.85 | 62.0 | 5.31e-01 | 97.1% | 49.5% |
| 2gjvA00 | 3.30.2000.10 | Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like | 0.74 | 48.0 | 4.88e-01 | 97.8% | 66.2% |
| 3d2uA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 35.0 | 4.27e-01 | 93.5% | 70.7% |
| 3uezC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 29.0 | 3.67e-01 | 94.2% | 62.7% |
| 2mdaA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.69 | 36.0 | 4.25e-01 | 93.5% | 72.6% |
| 2y3uA02 | 3.30.980.50 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › | 0.69 | 43.0 | 4.75e-01 | 96.4% | 77.0% |
| 3ahpA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 32.0 | 3.61e-01 | 90.6% | 61.3% |
| 2nyiA02 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.62 | 31.0 | 3.74e-01 | 87.1% | 71.1% |
| 4afhE00 | 2.70.170.10 | Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain | 0.58 | 42.0 | 3.67e-01 | 97.8% | 49.1% |
| 4evuB00 | 3.30.1660.10 | Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin | 0.58 | 26.0 | 3.55e-01 | 86.3% | 83.8% |
| 5ejlA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.57 | 33.0 | 3.49e-01 | 95.7% | 62.9% |
| 3ue2A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 29.0 | 3.49e-01 | 91.4% | 72.7% |
| 5k8mA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 37.0 | 3.89e-01 | 87.1% | 76.3% |
| 2govA01 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.53 | 31.0 | 2.90e-01 | 93.5% | 43.9% |
| 1y5oA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 22.0 | 2.42e-01 | 95.0% | 41.7% |
| 1ohgA01 | 3.30.2400.10 | Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 | 0.50 | 43.0 | 4.26e-01 | 92.1% | 91.8% |
| 4binA01 | 2.60.40.3500 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 31.0 | 3.40e-01 | 96.4% | 74.1% |
| 4z9eA00 | 3.30.110.20 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain | 0.50 | 31.0 | 3.80e-01 | 91.4% | 100.0% |
| 2aneH00 | 2.30.130.40 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like | 0.50 | 30.0 | 3.32e-01 | 93.5% | 73.4% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4888780 | 304.124.1.5 ↗ | a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss | 0.89 | 80.0 | 6.51e-01 | 100.0% | 55.1% |
| 5057183 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.72 | 34.0 | 4.08e-01 | 92.8% | 66.3% |
| 3526482 | 331.3.1.9 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 | 0.68 | 39.0 | 4.41e-01 | 84.2% | 73.3% |
| 5045726 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.67 | 31.0 | 3.96e-01 | 89.9% | 73.8% |
| 4475311 | 304.162.1.0 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain | 0.67 | 31.0 | 3.89e-01 | 89.9% | 70.6% |
| 3280414 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.67 | 39.0 | 4.48e-01 | 90.6% | 77.1% |
| 3971017 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.67 | 39.0 | 4.31e-01 | 89.9% | 71.8% |
| 5050287 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.62 | 35.0 | 4.23e-01 | 95.7% | 83.3% |
| 3964535 | 310.3.1.1 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › PilO | 0.62 | 37.0 | 4.02e-01 | 96.4% | 70.4% |
| 4940823 | 4081.1.1.0 ↗ | beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related | 0.61 | 43.0 | 3.86e-01 | 96.4% | 52.1% |
| 5082575 | 304.109.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e | 0.61 | 33.0 | 4.25e-01 | 93.5% | 91.3% |
| 3702663 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.61 | 39.0 | 3.85e-01 | 93.5% | 61.4% |
| 3616492 | 101.1.12.0 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures | 0.59 | 22.0 | 2.78e-01 | 92.1% | 54.1% |
| 3576789 | 11.12.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like › Neur_chan_LBD | 0.58 | 36.0 | 3.31e-01 | 95.7% | 45.9% |
| 3281834 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.58 | 38.0 | 3.85e-01 | 94.2% | 66.4% |
| 3981111 | 1.1.7.89 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF26002 | 0.57 | 33.0 | 3.23e-01 | 95.7% | 51.0% |
| 4140243 | 1.1.5.82 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF2001 | 0.55 | 35.0 | 3.87e-01 | 94.2% | 78.3% |
| 4034209 | 1.1.13.4 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail | 0.54 | 42.0 | 4.29e-01 | 93.5% | 82.8% |
| 2842229 | 2485.3.1.9 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF4043 | 0.54 | 47.0 | 3.47e-01 | 94.2% | 81.9% |
| 4131100 | 1.1.7.87 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25954 | 0.54 | 32.0 | 3.33e-01 | 95.7% | 60.7% |
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 35.0 | 3.80e-01 | 89.2% | 79.1% |
| 5012991 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.53 | 34.0 | 3.70e-01 | 95.0% | 75.0% |
| 5047424 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.53 | 34.0 | 3.70e-01 | 89.9% | 75.8% |
| 3612888 | 304.31.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMG-CoA reductase › NAD-binding domain of HMG-CoA reductase | 0.52 | 31.0 | 3.33e-01 | 92.8% | 66.7% |
| 4663897 | 12.1.1.43 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_38 | 0.52 | 35.0 | 3.79e-01 | 97.1% | 80.0% |
| 3690806 | 304.133.1.1 ↗ | a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL | 0.52 | 39.0 | 4.03e-01 | 89.2% | 80.7% |
| 3591908 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.52 | 40.0 | 3.73e-01 | 95.0% | 63.3% |
| 5043613 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.52 | 34.0 | 3.55e-01 | 95.0% | 72.0% |
| 5016346 | 1.1.9.23 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › DUF473 | 0.50 | 32.0 | 3.46e-01 | 94.2% | 74.2% |