←Back to structures
IMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033146
Arc-VirIMGVR_UViG_3300028797_000097-3300028797-Ga0265301_10000033146
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 31-89
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4b8vA02 | 3.10.350.10 | Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain | 0.78 | 60.0 | 5.59e-01 | 91.5% | 67.1% |
| 4bopB00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.69 | 49.0 | 3.59e-01 | 72.9% | 48.0% |
| 4bouA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.68 | 49.0 | 3.68e-01 | 76.3% | 56.0% |
| 6dx5A00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.64 | 46.0 | 3.35e-01 | 76.3% | 56.2% |
| 1z0xA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 46.0 | 4.50e-01 | 83.1% | 86.4% |
| 1tkeA03 | 3.30.54.20 | Alpha Beta › 2-Layer Sandwich › Replication Terminator Protein; Chain A, domain 2 › | 0.58 | 39.0 | 3.96e-01 | 96.6% | 72.4% |
| 2mr9A00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.53 | 32.0 | 3.49e-01 | 71.2% | 79.5% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 39.0 | 3.82e-01 | 83.1% | 78.8% |
| 3blnA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 35.0 | 2.74e-01 | 72.9% | 41.5% |
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.51 | 35.0 | 2.76e-01 | 98.3% | 32.1% |
| 2dzlA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.50 | 34.0 | 3.32e-01 | 72.9% | 63.6% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4995817 | 101.15.1.4 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 | 0.95 | 85.0 | 7.92e-01 | 94.9% | 80.0% |
| 5004560 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.86 | 71.0 | 7.31e-01 | 93.2% | 94.5% |
| 2809236 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 70.0 | 6.91e-01 | 89.8% | 83.9% |
| 3587382 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.85 | 69.0 | 7.10e-01 | 93.2% | 94.5% |
| 4177991 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.84 | 67.0 | 6.96e-01 | 93.2% | 92.7% |
| 3955076 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.83 | 60.0 | 6.66e-01 | 81.4% | 100.0% |
| 3185732 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.81 | 67.0 | 6.96e-01 | 89.8% | 96.4% |
| 3166029 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.80 | 66.0 | 6.78e-01 | 94.9% | 96.4% |
| 3670445 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.79 | 72.0 | 4.45e-01 | 100.0% | 19.0% |
| 3979943 | 101.15.1.3 ↗ | alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X | 0.78 | 59.0 | 6.28e-01 | 84.7% | 96.0% |
| 3679146 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.77 | 64.0 | 5.01e-01 | 100.0% | 43.2% |
| 3656643 | 101.15.1.9 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM1_NFP_LYK, LysM2_CERK1_LYK3_4_5 | 0.76 | 69.0 | 5.21e-01 | 100.0% | 45.2% |
| 2895417 | 101.15.1.0 ↗ | alpha arrays › HTH › LysM domain › LysM domain | 0.74 | 60.0 | 5.53e-01 | 94.9% | 70.1% |
| 3422876 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.72 | 61.0 | 6.10e-01 | 100.0% | 93.3% |
| 3993036 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.72 | 49.0 | 3.72e-01 | 71.2% | 53.3% |
| 4028903 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.69 | 48.0 | 3.51e-01 | 72.9% | 45.6% |
| 3595522 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.69 | 48.0 | 3.55e-01 | 72.9% | 50.0% |
| 3732360 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.68 | 48.0 | 3.42e-01 | 74.6% | 54.4% |
| 3647286 | 101.15.1.7 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK | 0.68 | 58.0 | 5.44e-01 | 100.0% | 81.3% |
| 2429117 | 219.1.1.15 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › OTU | 0.64 | 47.0 | 3.48e-01 | 76.3% | 50.0% |
| 1512999 | 3953.1.1.0 ↗ | a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain | 0.64 | 50.0 | 4.28e-01 | 94.9% | 51.5% |
| None | — | 0.57 | 44.0 | 2.62e-01 | 91.5% | 52.5% | |
| 3590235 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.52 | 42.0 | 3.09e-01 | 93.2% | 74.5% |
| 3643262 | 2005.1.1.43 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CHX17_2nd | 0.52 | 39.0 | 2.91e-01 | 84.7% | 73.9% |
| 166544 | 213.1.1.1 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 | 0.51 | 35.0 | 2.74e-01 | 72.9% | 41.5% |
| 3600597 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.50 | 34.0 | 2.65e-01 | 72.9% | 86.7% |